Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 6
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82251 | Canola | extracellular, golgi | 85.19 | 80.7 |
| CDX82249 | Canola | plasma membrane, vacuole | 71.96 | 71.02 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 68.25 | 67.01 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 57.14 | 56.69 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 57.14 | 56.69 |
| CDY43081 | Canola | extracellular, vacuole | 55.56 | 54.97 |
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 54.76 | 54.91 |
| CDY29822 | Canola | vacuole | 58.2 | 54.59 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 54.23 | 54.09 |
| CDY50084 | Canola | extracellular, vacuole | 54.5 | 53.93 |
| CDY25415 | Canola | vacuole | 55.82 | 52.23 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 55.82 | 47.95 |
| CDX83143 | Canola | cytosol | 39.95 | 47.19 |
| CDX82252 | Canola | plastid | 43.65 | 45.96 |
| CDY36041 | Canola | plasma membrane | 43.12 | 45.79 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 44.71 | 45.07 |
| CDY04288 | Canola | cytosol | 16.14 | 43.57 |
| CDY70350 | Canola | plastid | 18.52 | 40.94 |
| CDY70349 | Canola | cytosol | 28.57 | 40.91 |
| CDX99123 | Canola | cytosol | 19.84 | 39.06 |
| CDY34004 | Canola | cytosol | 30.42 | 38.33 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 33.33 | 38.18 |
| CDY28571 | Canola | cytosol | 20.9 | 34.96 |
| CDY04290 | Canola | extracellular | 23.55 | 34.63 |
| CDY44083 | Canola | cytosol | 28.31 | 33.97 |
| CDY58708 | Canola | cytosol, nucleus, plastid | 27.51 | 33.77 |
| CDX81648 | Canola | plastid | 25.4 | 33.57 |
| CDX89595 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 44.18 | 32.49 |
| CDY57407 | Canola | cytosol | 25.93 | 31.61 |
| CDY39500 | Canola | cytosol | 26.72 | 31.56 |
| CDX74582 | Canola | extracellular, golgi, plastid | 31.22 | 31.55 |
| CDY07338 | Canola | plastid | 25.13 | 31.46 |
| CDX95908 | Canola | plastid | 29.37 | 30.33 |
| CDY28575 | Canola | golgi | 24.07 | 29.84 |
| CDY36039 | Canola | vacuole | 71.96 | 29.53 |
| CDY07340 | Canola | plastid | 24.87 | 29.47 |
| CDY04283 | Canola | plastid | 24.87 | 29.47 |
| CDX82371 | Canola | cytosol | 24.07 | 29.45 |
| CDX87055 | Canola | golgi, plasma membrane | 25.93 | 29.43 |
| CDX93727 | Canola | endoplasmic reticulum, extracellular, golgi | 28.57 | 29.11 |
| CDY19776 | Canola | extracellular, plasma membrane, vacuole | 26.45 | 28.9 |
| CDX87054 | Canola | extracellular | 26.72 | 28.86 |
| CDY19775 | Canola | extracellular | 26.72 | 28.86 |
| CDY67101 | Canola | endoplasmic reticulum, extracellular, vacuole | 26.72 | 28.86 |
| CDX75913 | Canola | cytosol | 23.55 | 28.8 |
| CDX80557 | Canola | extracellular | 26.45 | 28.57 |
| CDY67361 | Canola | vacuole | 25.93 | 28.0 |
| CDY24977 | Canola | extracellular | 25.93 | 27.92 |
| CDY05532 | Canola | extracellular | 25.93 | 27.92 |
| CDY05531 | Canola | cytosol | 21.96 | 27.76 |
| CDX88229 | Canola | extracellular | 25.66 | 27.71 |
| CDY19777 | Canola | extracellular | 25.13 | 27.62 |
| CDX87056 | Canola | extracellular | 24.87 | 27.41 |
| CDY05324 | Canola | cytosol | 20.9 | 26.33 |
| CDY19307 | Canola | cytosol | 26.72 | 26.03 |
| CDY70520 | Canola | vacuole | 22.75 | 25.9 |
| CDX86065 | Canola | cytosol | 21.16 | 25.4 |
| CDX91855 | Canola | extracellular, plasma membrane, vacuole | 13.23 | 25.25 |
| KRH68153 | Soybean | cytosol | 20.63 | 25.0 |
| CDX91854 | Canola | cytosol | 19.31 | 24.58 |
| CDX81956 | Canola | extracellular | 19.84 | 24.43 |
| CDY07146 | Canola | cytosol | 19.05 | 24.41 |
| CDX74378 | Canola | cytosol | 18.52 | 24.39 |
| CDY44084 | Canola | cytosol | 26.72 | 23.93 |
| CDY46265 | Canola | plasma membrane | 29.63 | 23.83 |
| CDY29329 | Canola | plasma membrane | 29.63 | 23.78 |
| CDY51713 | Canola | cytosol | 18.52 | 23.73 |
| CDY07196 | Canola | cytosol | 17.72 | 22.56 |
| CDY48522 | Canola | cytosol | 15.34 | 20.79 |
| CDX79503 | Canola | cytosol | 16.4 | 20.33 |
| CDY23783 | Canola | cytosol | 16.4 | 20.13 |
| CDY37377 | Canola | cytosol, plastid | 25.93 | 20.0 |
| CDX84705 | Canola | cytosol | 15.87 | 19.61 |
| CDY12160 | Canola | cytosol | 15.61 | 18.97 |
| CDY60616 | Canola | cytosol, mitochondrion, plastid | 12.43 | 16.32 |
Protein Annotations
| EnsemblPlants:CDY36040 | EnsemblPlantsGene:GSBRNA2T00059855001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDY36040 | ProteinID:CDY36040.1 | SignalP:SignalP-noTM | SMART:SM00061 |
| SUPFAM:SSF49599 | TMHMM:TMhelix | UniParc:UPI0004EE8663 | UniProt:A0A078HCE5 | MapMan:35.1 | : |
Description
BnaC03g41580DBnaC03g41580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCE5]
Coordinates
chrLK032366:-:66777..69279
Molecular Weight (calculated)
44058.6 Da
IEP (calculated)
7.966
GRAVY (calculated)
-0.159
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSHYTYTIY VVYLLFCLLI TSASAQSLIR QSTDDRNTPL QQENGAKAVS ILGEAHYLDK DDLENIKINL PKNLITQSFK KFEYIVYHPY LNVFLIIYIN
101: FQSLICILFE TLCYAMSLIV YPNGNRQDSG SGFISLYVAI DNSTFVAAHQ EVFADLRFYV FRRTERNFFT VQDTNVWRYN IFKTMWGFPR VLPLDTFRNP
201: SNGYLFNGDH CEFGVDVTIH TPFQRSELFT VARNFPNPRF TWNILRFSTL LGETYFSDVF SIGGRNWNIQ VNPSGAVTGE GRALSMYLLL NANERIRPYE
301: KIYVRAQLRV LNQRASSQWR TIERPIDHWF TGPGLGWGYH EFVPLADFRD PERGYLVNDK LMVQVEMEAI SSTRYFPS
101: FQSLICILFE TLCYAMSLIV YPNGNRQDSG SGFISLYVAI DNSTFVAAHQ EVFADLRFYV FRRTERNFFT VQDTNVWRYN IFKTMWGFPR VLPLDTFRNP
201: SNGYLFNGDH CEFGVDVTIH TPFQRSELFT VARNFPNPRF TWNILRFSTL LGETYFSDVF SIGGRNWNIQ VNPSGAVTGE GRALSMYLLL NANERIRPYE
301: KIYVRAQLRV LNQRASSQWR TIERPIDHWF TGPGLGWGYH EFVPLADFRD PERGYLVNDK LMVQVEMEAI SSTRYFPS
001: MMSYHYINTL CIVISLLSCL FITSSFAGPV PNQENGSQKI FPTQISSRDS KVSLSSTVKG LRERPPSSYS LKMESFNTLM KSVYTERYES RPFRVGRYNW
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
Arabidopsis Description
AT3g20360/MQC12_11 [Source:UniProtKB/TrEMBL;Acc:Q8W0Z1]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.