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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra037358.1-P Field mustard cytosol 88.53 85.76
CDY07196 Canola cytosol 90.68 85.19
CDY51713 Canola cytosol 55.56 52.54
CDY07146 Canola cytosol 54.48 51.53
CDX91854 Canola cytosol 49.1 46.13
CDX74378 Canola cytosol 45.52 44.25
CDX91855 Canola extracellular, plasma membrane, vacuole 30.11 42.42
CDY23783 Canola cytosol 31.18 28.25
CDY12160 Canola cytosol 30.82 27.65
CDY60616 Canola cytosol, mitochondrion, plastid 27.96 27.08
CDX79503 Canola cytosol 29.03 26.56
CDX84705 Canola cytosol 28.67 26.14
CDY28571 Canola cytosol 19.35 23.89
CDX82371 Canola cytosol 25.81 23.3
CDX75913 Canola cytosol 25.45 22.98
CDY44083 Canola cytosol 24.73 21.9
CDY28575 Canola golgi 23.66 21.64
CDX99123 Canola cytosol 14.34 20.83
CDY70349 Canola cytosol 18.64 19.7
CDY05531 Canola cytosol 20.79 19.4
CDY04288 Canola cytosol 9.68 19.29
CDY07338 Canola plastid 20.79 19.21
CDY07340 Canola plastid 21.51 18.81
CDY04290 Canola extracellular 17.2 18.68
KRH68153 Soybean cytosol 20.79 18.59
CDY04283 Canola plastid 21.15 18.5
CDX87056 Canola extracellular 22.58 18.37
CDX87055 Canola golgi, plasma membrane 21.86 18.32
CDX95908 Canola plastid 24.01 18.31
CDY58708 Canola cytosol, nucleus, plastid 20.07 18.18
CDY19777 Canola extracellular 22.22 18.02
CDY05324 Canola cytosol 19.35 18.0
CDY70520 Canola vacuole 21.15 17.77
CDY19776 Canola extracellular, plasma membrane, vacuole 21.86 17.63
CDY43081 Canola extracellular, vacuole 23.66 17.28
CDY50084 Canola extracellular, vacuole 23.66 17.28
CDX80557 Canola extracellular 21.51 17.14
CDY67101 Canola endoplasmic reticulum, extracellular, vacuole 21.51 17.14
CDX81648 Canola plastid 17.56 17.13
CDY70350 Canola plastid 10.39 16.96
CDX81956 Canola extracellular 18.64 16.94
CDY44084 Canola cytosol 25.09 16.59
CDY67361 Canola vacuole 20.79 16.57
CDX88229 Canola extracellular 20.43 16.29
CDY05532 Canola extracellular 20.43 16.24
CDX82246 Canola endoplasmic reticulum, extracellular 21.86 16.18
CDX93727 Canola endoplasmic reticulum, extracellular, golgi 21.51 16.17
CDY19775 Canola extracellular 20.07 16.0
CDX87054 Canola extracellular 20.07 16.0
CDY24977 Canola extracellular 20.07 15.95
CDX82249 Canola plasma membrane, vacuole 21.86 15.93
CDX82251 Canola extracellular, golgi 22.58 15.79
CDY43080 Canola endoplasmic reticulum, vacuole 21.51 15.75
CDY50083 Canola endoplasmic reticulum, vacuole 21.51 15.75
CDX82252 Canola plastid 20.07 15.6
CDY50282 Canola endoplasmic reticulum, vacuole 21.51 15.58
CDY57407 Canola cytosol 17.2 15.48
CDY39666 Canola endoplasmic reticulum, vacuole 18.28 15.45
CDY36040 Canola extracellular 20.79 15.34
CDY39500 Canola cytosol 17.56 15.31
CDX83143 Canola cytosol 17.56 15.31
CDY36041 Canola plasma membrane 19.35 15.17
CDY25415 Canola vacuole 21.86 15.1
CDY29822 Canola vacuole 21.51 14.89
CDX74582 Canola extracellular, golgi, plastid 19.71 14.71
CDX86065 Canola cytosol 15.41 13.65
CDX82248 Canola endoplasmic reticulum, vacuole 21.51 13.64
CDY34004 Canola cytosol 13.98 13.0
CDY46265 Canola plasma membrane 20.79 12.34
CDY29329 Canola plasma membrane 20.43 12.1
CDY19307 Canola cytosol 16.13 11.6
CDX89595 Canola endoplasmic reticulum, plasma membrane, vacuole 19.35 10.51
CDY37377 Canola cytosol, plastid 17.92 10.2
CDY36039 Canola vacuole 22.22 6.73
Protein Annotations
EnsemblPlants:CDY48522EnsemblPlantsGene:GSBRNA2T00091230001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF213
PFAM:PF00917PFscan:PS50144ProteinID:CDY48522ProteinID:CDY48522.1SMART:SM00061SUPFAM:SSF49599
UniParc:UPI0004EE98F1UniProt:A0A078IEZ0MapMan:35.2:::
Description
BnaA09g00010DBnaA09g00010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEZ0]
Coordinates
chrLK032776:-:139743..141434
Molecular Weight (calculated)
32158.1 Da
IEP (calculated)
6.780
GRAVY (calculated)
-0.236
Length
279 amino acids
Sequence
(BLAST)
001: MSRPIPIEMM VQEFKKNHTN SHLFKIDNFS LLTKYEIDCI ESSVFDLCGR KWKILVNYDE DEEHVSIFLE NQDPLDVELE YQVYVVSQLK AVWYPKVNVK
101: WDFSASSKPI AKGITNLMSL DDLKSKGFLI EDCCMFGASL PDQKTERPGT AECFSLIEKP LNNKVTWMMT KFSSFDPEKA HQSNEFIVGN RKWRIEVHPR
201: GHEEAKGESC SVYLVGEGYI NNAPKTKTFA KSKLRVLDKL IGIILRQPIL IGLMKNMMTL MDKFYVGVEF EVISVAKYV
Best Arabidopsis Sequence Match ( AT4G00780.1 )
(BLAST)
001: MSRPIPIEEM VRLFKIRHTT SHLFKIDNFS LLKKHGIEKV ESSVFDLAGH KWKLSVYPNG HKNAKGTHVS MFLVNQVPVN DMPTYELLVV SQLERKWHTH
101: GRDEFDINPE PASEGFLRFI SLADLERKGF LIGDCCMFGV KFHGIEPANP GTAECFSLIE KPLNHKVTWM MSKFSSFNPG KAHQSNEFVV GTRKWRLEVH
201: PRGYMDEKDK SFSVYLSAEG FVNNAPMTKT YAKFKLRVLD QVSWNHVEES GLSWFDAEPS DQSGFADFMP LGKLNEPYLV KDKLYVGVEF EVVSTTYYC
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ38]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.