Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70349 | Canola | cytosol | 62.39 | 53.41 |
| CDY04290 | Canola | extracellular | 57.96 | 50.97 |
| CDY44083 | Canola | cytosol | 69.47 | 49.84 |
| CDY58708 | Canola | cytosol, nucleus, plastid | 64.6 | 47.4 |
| CDY04288 | Canola | cytosol | 27.88 | 45.0 |
| CDY07338 | Canola | plastid | 55.75 | 41.72 |
| CDY28575 | Canola | golgi | 54.87 | 40.66 |
| CDX81648 | Canola | plastid | 49.12 | 38.81 |
| CDY04283 | Canola | plastid | 54.42 | 38.56 |
| CDY07340 | Canola | plastid | 54.42 | 38.56 |
| CDX95908 | Canola | plastid | 60.62 | 37.43 |
| CDY44084 | Canola | cytosol | 68.14 | 36.49 |
| CDY57407 | Canola | cytosol | 49.12 | 35.81 |
| CDY70350 | Canola | plastid | 26.99 | 35.67 |
| CDX99123 | Canola | cytosol | 30.09 | 35.42 |
| CDY39500 | Canola | cytosol | 48.23 | 34.06 |
| CDY19307 | Canola | cytosol | 48.67 | 28.35 |
| CDX83143 | Canola | cytosol | 34.96 | 24.69 |
| CDY36041 | Canola | plasma membrane | 37.17 | 23.6 |
| CDX82249 | Canola | plasma membrane, vacuole | 39.38 | 23.24 |
| CDX82252 | Canola | plastid | 36.73 | 23.12 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 38.94 | 23.1 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 38.94 | 23.1 |
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 38.5 | 23.08 |
| CDX91855 | Canola | extracellular, plasma membrane, vacuole | 19.47 | 22.22 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 37.61 | 22.08 |
| CDX93727 | Canola | endoplasmic reticulum, extracellular, golgi | 35.84 | 21.83 |
| CDY50084 | Canola | extracellular, vacuole | 36.28 | 21.47 |
| CDY43081 | Canola | extracellular, vacuole | 36.28 | 21.47 |
| CDY36040 | Canola | extracellular | 34.96 | 20.9 |
| CDY07196 | Canola | cytosol | 26.99 | 20.54 |
| CDX82371 | Canola | cytosol | 27.88 | 20.39 |
| CDX74582 | Canola | extracellular, golgi, plastid | 33.63 | 20.32 |
| CDX86065 | Canola | cytosol | 28.32 | 20.32 |
| CDX82251 | Canola | extracellular, golgi | 35.84 | 20.3 |
| CDY25415 | Canola | vacuole | 36.28 | 20.3 |
| CDY05531 | Canola | cytosol | 26.55 | 20.07 |
| CDX75913 | Canola | cytosol | 27.43 | 20.06 |
| CDX79503 | Canola | cytosol | 26.99 | 20.0 |
| CDX84705 | Canola | cytosol | 26.99 | 19.93 |
| CDY29822 | Canola | vacuole | 35.4 | 19.85 |
| CDY37377 | Canola | cytosol, plastid | 42.92 | 19.8 |
| CDY05324 | Canola | cytosol | 26.11 | 19.67 |
| CDY07146 | Canola | cytosol | 25.66 | 19.66 |
| KRH68153 | Soybean | cytosol | 26.99 | 19.55 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 38.05 | 19.55 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 28.32 | 19.39 |
| CDY48522 | Canola | cytosol | 23.89 | 19.35 |
| CDX91854 | Canola | cytosol | 24.78 | 18.86 |
| CDX74378 | Canola | cytosol | 23.89 | 18.82 |
| CDY51713 | Canola | cytosol | 24.34 | 18.64 |
| CDX87055 | Canola | golgi, plasma membrane | 26.99 | 18.32 |
| CDX81956 | Canola | extracellular | 24.78 | 18.24 |
| CDY34004 | Canola | cytosol | 23.89 | 18.0 |
| CDY70520 | Canola | vacuole | 26.11 | 17.77 |
| CDX88229 | Canola | extracellular | 26.99 | 17.43 |
| CDY12160 | Canola | cytosol | 23.89 | 17.36 |
| CDY19776 | Canola | extracellular, plasma membrane, vacuole | 26.55 | 17.34 |
| CDY23783 | Canola | cytosol | 23.45 | 17.21 |
| CDY67361 | Canola | vacuole | 26.55 | 17.14 |
| CDY67101 | Canola | endoplasmic reticulum, extracellular, vacuole | 26.11 | 16.86 |
| CDX80557 | Canola | extracellular | 25.66 | 16.57 |
| CDX87054 | Canola | extracellular | 25.66 | 16.57 |
| CDY46265 | Canola | plasma membrane | 34.07 | 16.38 |
| CDX87056 | Canola | extracellular | 24.78 | 16.33 |
| CDY60616 | Canola | cytosol, mitochondrion, plastid | 20.8 | 16.32 |
| CDY19775 | Canola | extracellular | 25.22 | 16.29 |
| CDY19777 | Canola | extracellular | 24.78 | 16.28 |
| CDY24977 | Canola | extracellular | 25.22 | 16.24 |
| CDY05532 | Canola | extracellular | 25.22 | 16.24 |
| CDY29329 | Canola | plasma membrane | 33.63 | 16.14 |
| CDX89595 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 34.07 | 14.98 |
| CDY36039 | Canola | vacuole | 39.38 | 9.66 |
Protein Annotations
| EnsemblPlants:CDY28571 | EnsemblPlantsGene:GSBRNA2T00040533001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDY28571 | ProteinID:CDY28571.1 | SMART:SM00061 | SUPFAM:SSF49599 |
| UniParc:UPI0004EED5AA | UniProt:A0A078GSU4 | MapMan:35.2 | : | : | : |
Description
BnaC02g19400DBnaC02g19400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSU4]
Coordinates
chrLK032222:-:353803..355231
Molecular Weight (calculated)
26005.8 Da
IEP (calculated)
5.894
GRAVY (calculated)
-0.377
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVGIFRRTN VVYSDEPTVY FICSDVEVNR FNALKTVWGL QQVLSSDSFN NPESGYVFEG DQCEFGVDVI VPSPRSNWEI LSFNEKLRNP KFSWSVKKFS
101: QLKEDKYISN TFSVGARKWV LWLYPKGGSG EDGKWLSLYL QSADSDKPKA DEKILAQANL RVLDPLGSNH IEVKLNNWHV EQNLGWGRTR FLSLAELRKV
201: YLDKEDALKV EIEFEVVSST KYYPII
101: QLKEDKYISN TFSVGARKWV LWLYPKGGSG EDGKWLSLYL QSADSDKPKA DEKILAQANL RVLDPLGSNH IEVKLNNWHV EQNLGWGRTR FLSLAELRKV
201: YLDKEDALKV EIEFEVVSST KYYPII
001: MGASCSAPVS STIKKNWRDH PPSSYSLKIH NFSQLEKTTS FSGHKYQSRL FSSGDITGNV KDNGSGFISM YVELDSSSLM ESKPPTEVFA ELRFFVYNKK
101: QNKYFTKDVE IKRFDALKMV WGLPKGNECE FGVDVIVAPP LTNWEILSFH DEKLSYPKVT WSVKNFSQWK ENECSKPNRF SIGGREWVLK LFPKGNSRAK
201: GKYLSVFLYL ADNETLKPDE KIFTQVVVRI LNPLGSNHVA SRLNYWHKGS NFGYGWCKFL SLDKIRKTYL DKEDTLMIEA EFEVVSATKF STII
101: QNKYFTKDVE IKRFDALKMV WGLPKGNECE FGVDVIVAPP LTNWEILSFH DEKLSYPKVT WSVKNFSQWK ENECSKPNRF SIGGREWVLK LFPKGNSRAK
201: GKYLSVFLYL ADNETLKPDE KIFTQVVVRI LNPLGSNHVA SRLNYWHKGS NFGYGWCKFL SLDKIRKTYL DKEDTLMIEA EFEVVSATKF STII
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9FWZ3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.