CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, extracellular

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, golgi
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99123	Canola	cytosol	30.19	58.33
CDX86065	Canola	cytosol	41.24	48.57
CDX74582	Canola	extracellular, golgi, plastid	38.27	37.97
CDY44083	Canola	cytosol	31.54	37.14
CDY70349	Canola	cytosol	26.42	37.12
CDY70350	Canola	plastid	16.98	36.84
CDY58708	Canola	cytosol, nucleus, plastid	30.19	36.36
CDY04290	Canola	extracellular	25.07	36.19
CDX82246	Canola	endoplasmic reticulum, extracellular	36.66	36.07
CDY50084	Canola	extracellular, vacuole	36.93	35.86
CDY28571	Canola	cytosol	21.83	35.84
CDY07338	Canola	plastid	29.11	35.76
CDY28575	Canola	golgi	29.38	35.74
CDY43081	Canola	extracellular, vacuole	36.66	35.6
CDX83143	Canola	cytosol	30.46	35.31
CDY57407	Canola	cytosol	29.11	34.84
CDY50083	Canola	endoplasmic reticulum, vacuole	35.58	34.65
CDY07340	Canola	plastid	29.65	34.48
CDY04283	Canola	plastid	29.65	34.48
CDY43080	Canola	endoplasmic reticulum, vacuole	35.31	34.38
CDX82252	Canola	plastid	32.88	33.98
CDY25415	Canola	vacuole	36.66	33.66
CDY29822	Canola	vacuole	36.39	33.5
CDY36041	Canola	plasma membrane	32.08	33.43
CDY50282	Canola	endoplasmic reticulum, vacuole	34.23	32.99
CDY34004	Canola	cytosol	26.42	32.67
CDX82249	Canola	plasma membrane, vacuole	33.42	32.38
CDX81648	Canola	plastid	24.8	32.17
CDY04288	Canola	cytosol	12.13	32.14
CDX82251	Canola	extracellular, golgi	34.5	32.08
CDX95908	Canola	plastid	31.27	31.69
CDX82248	Canola	endoplasmic reticulum, vacuole	36.12	30.45
KRH68153	Soybean	cytosol	25.61	30.45
CDY29329	Canola	plasma membrane	38.27	30.15
CDY46265	Canola	plasma membrane	38.01	30.0
CDY39500	Canola	cytosol	25.34	29.38
CDY36040	Canola	extracellular	29.11	28.57
CDY44084	Canola	cytosol	31.54	27.73
CDY39666	Canola	endoplasmic reticulum, vacuole	24.26	27.27
CDX82371	Canola	cytosol	22.1	26.54
CDX74378	Canola	cytosol	20.49	26.48
CDY07146	Canola	cytosol	21.02	26.44
CDX91854	Canola	cytosol	21.02	26.26
CDX91855	Canola	extracellular, plasma membrane, vacuole	13.75	25.76
CDY05531	Canola	cytosol	20.75	25.75
CDX75913	Canola	cytosol	21.29	25.57
CDY51713	Canola	cytosol	20.22	25.42
CDX87055	Canola	golgi, plasma membrane	22.37	24.92
CDY07196	Canola	cytosol	19.68	24.58
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	23.18	24.57
CDX80557	Canola	extracellular	23.18	24.57
CDX84705	Canola	cytosol	20.22	24.51
CDY19307	Canola	cytosol	25.61	24.48
CDY05324	Canola	cytosol	19.68	24.33
CDY19775	Canola	extracellular	22.64	24.0
CDX79503	Canola	cytosol	19.68	23.93
CDX87054	Canola	extracellular	22.37	23.71
CDX88229	Canola	extracellular	22.1	23.43
CDY67361	Canola	vacuole	22.1	23.43
CDY19776	Canola	extracellular, plasma membrane, vacuole	21.83	23.41
CDY12160	Canola	cytosol	19.14	22.83
CDY05532	Canola	extracellular	21.29	22.51
CDY24977	Canola	extracellular	21.29	22.51
CDY70520	Canola	vacuole	19.95	22.29
CDX87056	Canola	extracellular	20.49	22.16
CDY23783	Canola	cytosol	18.33	22.08
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	30.46	21.98
CDY19777	Canola	extracellular	20.22	21.8
CDY48522	Canola	cytosol	16.17	21.51
CDY60616	Canola	cytosol, mitochondrion, plastid	16.17	20.83
CDX81956	Canola	extracellular	16.71	20.2
CDY37377	Canola	cytosol, plastid	25.34	19.18
CDY36039	Canola	vacuole	34.23	13.79

Protein Annotations

EnsemblPlants:CDX93727	EnsemblPlantsGene:GSBRNA2T00156440001	Gene3D:2.60.210.10	GO:A0A078DXU6	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	ProteinID:CDX93727	ProteinID:CDX93727.1	SEG:seg
SMART:SM00061	SUPFAM:SSF49599	TMHMM:TMhelix	UniParc:UPI0004EDEDD3	MapMan:35.2	:

Description

BnaA09g23270D

Coordinates

chrLK031877:-:209701..211645

Molecular Weight (calculated)

42333.8 Da

IEP (calculated)

6.786

GRAVY (calculated)

-0.337

Length

371 amino acids

Sequence
(BLAST)

001: MVAEEKKRNI SYGSIFVFCF FCFVFVAEVV RFVKPNYDFK QNVFTERDVT VTEAIAEAVV EGSHFVMDSI SPCNSRRSGL PRRKQHEKLE APIGQWRERP
101: PTTYCIKFES FRTLLNLVKD GKYVSRPFSS GGYNWTYEIY PNGDKRVGAN GLISLYVRID NSTLITNPQD VYAEIKFFVY NRKQDKYYSY HGITANYLDP
201: TTGYVFDGDQ CVFGVDVFVA QPFKKWEVFS FDEHVNEPIF SWKLTHLSTS FSDSYTSGTF TSGGRNWVLK VYPNGDGYGK GNSLSLYLLS ESNEKAYVRA
301: KLRVLDQINS NHVEKLVEGW PNAAENSGWG FEKFVPLADL KDQSRGLVVD DALKVEVEII AFSKTDSTLN A

Best Arabidopsis Sequence Match ( AT1G58270.1 )
(BLAST)

001: MYSEEKKSRN YGSIFVYCFF CFVLIVEVAR FAKPYINLQN LIETEAVVEE GFMAVGNSGN LPCGSSKPSS ASVRAHDEQK LSQAVTTDTR TRPPNSYCVK
101: FQSFVTMAKQ VKENGGKYES RPFSVGGYNW TLLIYPVIYI PTDSGGYVSI YVRVDNSSLI TNPKDVYAEI TFLAYKSSTD KYQISQETEA QRFHLFKQQW
201: GLLQFLPIYY FENPAYGYFF EGESVVFGVD INIVKPFENW EVFSNEQNIR DPIFEWRLTK FSTRFLDSYT SDSFSSGGRN WALKVYPNGV GNATGNSLSL
301: YLLSDQSNDK GYVEAKLRVI DQIQSNNFEK KVAAWPNATE NGWGFDRFLS FADIKNTSKG FLVNDTLKLE VQILSFSKTD YYSHQSSLNV LTGDST

Arabidopsis Description

ZW9At1g58270/F19C14_8 [Source:UniProtKB/TrEMBL;Acc:Q9SLV3]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.