CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
plastid 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022923.1-P	Field mustard	cytosol	100.0	100.0
CDX79503	Canola	cytosol	94.77	95.08
CDY12160	Canola	cytosol	53.59	52.73
CDY23783	Canola	cytosol	52.94	52.6
CDY60616	Canola	cytosol, mitochondrion, plastid	45.75	48.61
CDX91855	Canola	extracellular, plasma membrane, vacuole	20.91	32.32
CDX74378	Canola	cytosol	29.41	31.36
CDX91854	Canola	cytosol	30.39	31.31
CDY07146	Canola	cytosol	28.76	29.83
CDX99123	Canola	cytosol	18.63	29.69
CDY51713	Canola	cytosol	28.43	29.49
CDY07196	Canola	cytosol	28.43	29.29
CDY48522	Canola	cytosol	26.14	28.67
CDY28571	Canola	cytosol	19.93	26.99
CDY05531	Canola	cytosol	23.86	24.41
KRH68153	Soybean	cytosol	24.51	24.04
CDY05324	Canola	cytosol	23.53	24.0
CDX75913	Canola	cytosol	23.2	22.98
CDX82371	Canola	cytosol	23.2	22.98
CDY70520	Canola	vacuole	24.84	22.89
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	25.16	22.0
CDX87055	Canola	golgi, plasma membrane	23.86	21.92
CDY44083	Canola	cytosol	22.55	21.9
CDY70349	Canola	cytosol	18.63	21.59
CDY07338	Canola	plastid	21.24	21.52
CDX80557	Canola	extracellular	24.51	21.43
CDY24977	Canola	extracellular	24.51	21.37
CDY05532	Canola	extracellular	24.51	21.37
CDX83143	Canola	cytosol	22.22	21.25
CDX81956	Canola	extracellular	21.24	21.17
CDY67361	Canola	vacuole	24.18	21.14
CDX74582	Canola	extracellular, golgi, plastid	25.82	21.12
CDY04290	Canola	extracellular	17.65	21.01
CDX87056	Canola	extracellular	23.53	20.99
CDX87054	Canola	extracellular	23.86	20.86
CDX88229	Canola	extracellular	23.86	20.86
CDY19775	Canola	extracellular	23.86	20.86
CDY19776	Canola	extracellular, plasma membrane, vacuole	23.53	20.81
CDY58708	Canola	cytosol, nucleus, plastid	20.91	20.78
CDY07340	Canola	plastid	21.57	20.69
CDY28575	Canola	golgi	20.59	20.66
CDY19777	Canola	extracellular	23.2	20.64
CDY36041	Canola	plasma membrane	23.86	20.51
CDX82252	Canola	plastid	23.86	20.33
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	24.51	20.22
CDY04283	Canola	plastid	20.59	19.75
CDX95908	Canola	plastid	23.53	19.67
CDX82246	Canola	endoplasmic reticulum, extracellular	24.18	19.63
CDX81648	Canola	plastid	18.3	19.58
CDX86065	Canola	cytosol	19.61	19.05
CDY34004	Canola	cytosol	18.3	18.67
CDY50084	Canola	extracellular, vacuole	23.2	18.59
CDY50083	Canola	endoplasmic reticulum, vacuole	22.88	18.37
CDY43080	Canola	endoplasmic reticulum, vacuole	22.88	18.37
CDY57407	Canola	cytosol	18.3	18.06
CDY43081	Canola	extracellular, vacuole	22.55	18.06
CDX82249	Canola	plasma membrane, vacuole	22.22	17.75
CDY39666	Canola	endoplasmic reticulum, vacuole	18.95	17.58
CDX82251	Canola	extracellular, golgi	22.22	17.04
CDY25415	Canola	vacuole	22.22	16.83
CDY29822	Canola	vacuole	21.9	16.63
CDY46265	Canola	plasma membrane	25.16	16.38
CDY29329	Canola	plasma membrane	24.84	16.14
CDY44084	Canola	cytosol	22.22	16.11
CDY39500	Canola	cytosol	16.67	15.94
CDY36040	Canola	extracellular	19.61	15.87
CDY50282	Canola	endoplasmic reticulum, vacuole	19.93	15.84
CDY70350	Canola	plastid	8.82	15.79
CDX82248	Canola	endoplasmic reticulum, vacuole	22.22	15.45
CDY04288	Canola	cytosol	6.21	13.57
CDY19307	Canola	cytosol	16.67	13.14
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	21.57	12.84
CDY37377	Canola	cytosol, plastid	17.65	11.02
CDY36039	Canola	vacuole	21.57	7.17

Protein Annotations

EnsemblPlants:CDX84705	EnsemblPlantsGene:GSBRNA2T00141986001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213
PFAM:PF00917	PFscan:PS50144	ProteinID:CDX84705	ProteinID:CDX84705.1	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI000253FCC5	MapMan:35.2	:	:	:	:

Description

BnaA03g15250D

Coordinates

chrLK031838:-:799401..801924

Molecular Weight (calculated)

35127.0 Da

IEP (calculated)

8.210

GRAVY (calculated)

-0.291

Length

306 amino acids

Sequence
(BLAST)

001: MGQTLSLEDT IRAEAKSHNN VHLMLVDGMS KLMTRQVENC VSSDFYVGGL KWNIVILQQQ DCLYYVLVIT DSKCIGSNWK VNCNVKLTIY SATSPFLNHN
101: RWTWFCFDAN NTTLLVSIPV KNMQELYTVN DKSVFSAEIT NVNPQSLDVG WNPRTMGTAE NIKLMEVERN KSKFTWKITH FSTFVSEHHS SYQFTVGPRK
201: WYLRMYPKGT LEGKGNSLSL YLHASDYVTG PNTKTLAVFK LRVLDQLKRN HHEIGQQFWF GSDGQKGEPK FLALEELHKA SNGFLVNDQI YIGVEFFYIS
301: TTENMI

Best Arabidopsis Sequence Match ( AT2G32870.1 )
(BLAST)

001: MNNSFRNKIH EQSKENLSDD RHKKSDRTLI VFNRKTPLYF YFFEQVRYIT GSIYILIETP SSRNLPIYSN ICIPISSHPN TNYRPKKRKK NPPTVYLTTI
101: ILIMGLLSLE DTIKEKLKDR KNAHFMLVDG MSKLLTEKVK NCQSLDFQVS GVKWRLVIRL SRGRKDHLSF VLEITDEKCT GSTWDVKFNF KIGIVPQTGP
201: DYCFVLVGHQ NEKKRSQGLA NFISHTDLKE RFLVNDKAGF YAEISDVQPN FPVTRIPRTM GTAERFKLIE FSPKNSRFTW KITQFSSFDG EEHSSYEFTV
301: GPRRWKLVMY PKGNGDGKGN SLSLYLFASD YVTNGPKGGT LAIYKLRVLD QLNRNHCETE CRYWFPYNPV NQMDSLWGRP KFLPLEELHK SSRGFLVNDQ
401: IYIGVEISIV STTEYL

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4IUR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.