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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, secretory
BaCelLo:secretory
iPSORT:mitochondrion
MultiLoc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX86065 Canola cytosol 80.73 49.21
AT3G46190.2 Thale cress cytosol 55.73 34.41
CDX93727 Canola endoplasmic reticulum, extracellular, golgi 58.33 30.19
CDY28571 Canola cytosol 35.42 30.09
CDY70349 Canola cytosol 39.06 28.41
CDY04290 Canola extracellular 33.85 25.29
CDX74582 Canola extracellular, golgi, plastid 46.35 23.8
CDX91855 Canola extracellular, plasma membrane, vacuole 23.96 23.23
CDX82246 Canola endoplasmic reticulum, extracellular 42.71 21.75
CDY44083 Canola cytosol 35.42 21.59
CDY04288 Canola cytosol 15.62 21.43
CDY58708 Canola cytosol, nucleus, plastid 34.38 21.43
CDY43080 Canola endoplasmic reticulum, vacuole 42.19 21.26
CDY50083 Canola endoplasmic reticulum, vacuole 42.19 21.26
CDY50084 Canola extracellular, vacuole 42.19 21.2
CDX83143 Canola cytosol 34.9 20.94
CDX95908 Canola plastid 39.58 20.77
CDY43081 Canola extracellular, vacuole 41.15 20.68
CDY07338 Canola plastid 32.29 20.53
CDX74378 Canola cytosol 30.21 20.21
CDX91854 Canola cytosol 31.25 20.2
CDY39666 Canola endoplasmic reticulum, vacuole 34.38 20.0
KRH68153 Soybean cytosol 32.29 19.87
CDY36040 Canola extracellular 39.06 19.84
CDY36041 Canola plasma membrane 36.46 19.66
CDX82249 Canola plasma membrane, vacuole 39.06 19.58
CDX81648 Canola plastid 29.17 19.58
CDX82252 Canola plastid 36.46 19.5
CDY07146 Canola cytosol 29.69 19.32
CDY50282 Canola endoplasmic reticulum, vacuole 38.54 19.22
CDX82248 Canola endoplasmic reticulum, vacuole 43.75 19.09
CDX82251 Canola extracellular, golgi 39.58 19.05
CDY29822 Canola vacuole 39.58 18.86
CDY05531 Canola cytosol 29.17 18.73
CDY05324 Canola cytosol 29.17 18.67
CDY51713 Canola cytosol 28.65 18.64
CDX84705 Canola cytosol 29.69 18.63
CDY25415 Canola vacuole 39.06 18.56
CDY07340 Canola plastid 30.73 18.5
CDY04283 Canola plastid 30.73 18.5
CDY57407 Canola cytosol 29.69 18.39
CDY28575 Canola golgi 29.17 18.36
CDY12160 Canola cytosol 29.69 18.33
CDY46265 Canola plasma membrane 44.79 18.3
CDY29329 Canola plasma membrane 44.79 18.26
CDY34004 Canola cytosol 28.12 18.0
CDY07196 Canola cytosol 27.6 17.85
CDX82371 Canola cytosol 28.65 17.8
CDY70520 Canola vacuole 30.73 17.77
CDX79503 Canola cytosol 28.12 17.7
CDX75913 Canola cytosol 28.12 17.48
CDX80557 Canola extracellular 31.25 17.14
CDY70350 Canola plastid 15.1 16.96
CDY67101 Canola endoplasmic reticulum, extracellular, vacuole 30.73 16.86
CDX88229 Canola extracellular 30.21 16.57
CDY39500 Canola cytosol 27.6 16.56
CDY23783 Canola cytosol 26.56 16.56
CDY60616 Canola cytosol, mitochondrion, plastid 24.48 16.32
CDY67361 Canola vacuole 29.69 16.29
CDY19775 Canola extracellular 29.69 16.29
CDX87054 Canola extracellular 29.17 16.0
CDY24977 Canola extracellular 29.17 15.95
CDY05532 Canola extracellular 29.17 15.95
CDX87055 Canola golgi, plasma membrane 27.6 15.92
CDY19776 Canola extracellular, plasma membrane, vacuole 27.6 15.32
CDX81956 Canola extracellular 24.48 15.31
CDY44084 Canola cytosol 33.33 15.17
CDY48522 Canola cytosol 20.83 14.34
CDX87056 Canola extracellular 25.52 14.29
CDY19777 Canola extracellular 25.52 14.24
CDX89595 Canola endoplasmic reticulum, plasma membrane, vacuole 37.5 14.01
CDY19307 Canola cytosol 27.08 13.4
CDY37377 Canola cytosol, plastid 26.56 10.41
CDY36039 Canola vacuole 39.06 8.14
Protein Annotations
EnsemblPlants:CDX99123EnsemblPlantsGene:GSBRNA2T00107275001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF213
PFAM:PF00917PFscan:PS50144ProteinID:CDX99123ProteinID:CDX99123.1SEG:segSMART:SM00061
SUPFAM:SSF49599UniParc:UPI0004EF1346MapMan:35.2:::
Description
BnaA06g18140D
Coordinates
chrLK031908:-:496229..497247
Molecular Weight (calculated)
21847.4 Da
IEP (calculated)
4.809
GRAVY (calculated)
-0.322
Length
192 amino acids
Sequence
(BLAST)
001: MFHSFETKRG VKQFLPTAWF TAPWASYGYI SEGGECVFGI DVFVAPPFNK WENFSYDENI SNPISNWNIT YVSTIHIDPY TSDPFSSGGR NWVLKVYPNG
101: YGIGTGNSLS LYLLSESNGN DYVRAKLRVL NQYSSNHVEK QVEGWSNVAE NRWGFEKFIS LSDLEDRTKG FIVNDLLEVE VTIMSFSKTN SI
Best Arabidopsis Sequence Match ( AT1G58270.1 )
(BLAST)
001: MYSEEKKSRN YGSIFVYCFF CFVLIVEVAR FAKPYINLQN LIETEAVVEE GFMAVGNSGN LPCGSSKPSS ASVRAHDEQK LSQAVTTDTR TRPPNSYCVK
101: FQSFVTMAKQ VKENGGKYES RPFSVGGYNW TLLIYPVIYI PTDSGGYVSI YVRVDNSSLI TNPKDVYAEI TFLAYKSSTD KYQISQETEA QRFHLFKQQW
201: GLLQFLPIYY FENPAYGYFF EGESVVFGVD INIVKPFENW EVFSNEQNIR DPIFEWRLTK FSTRFLDSYT SDSFSSGGRN WALKVYPNGV GNATGNSLSL
301: YLLSDQSNDK GYVEAKLRVI DQIQSNNFEK KVAAWPNATE NGWGFDRFLS FADIKNTSKG FLVNDTLKLE VQILSFSKTD YYSHQSSLNV LTGDST
Arabidopsis Description
ZW9At1g58270/F19C14_8 [Source:UniProtKB/TrEMBL;Acc:Q9SLV3]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.