CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004405.1-P	Field mustard	plastid	98.09	98.09
CDY70349	Canola	cytosol	56.83	78.79
CDY70350	Canola	plastid	35.52	76.02
CDY07338	Canola	plastid	57.65	69.87
CDY44083	Canola	cytosol	59.29	68.89
CDX81648	Canola	plastid	52.73	67.48
CDY04290	Canola	extracellular	46.45	66.15
CDY04288	Canola	cytosol	24.86	65.0
CDY28575	Canola	golgi	52.19	62.62
CDY58708	Canola	cytosol, nucleus, plastid	52.46	62.34
CDY07340	Canola	plastid	53.83	61.76
CDY04283	Canola	plastid	53.55	61.44
CDY28571	Canola	cytosol	37.43	60.62
CDY44084	Canola	cytosol	61.48	53.32
CDY57407	Canola	cytosol	44.26	52.26
CDY39500	Canola	cytosol	44.54	50.94
CDY19307	Canola	cytosol	45.08	42.53
CDX83143	Canola	cytosol	34.97	40.0
CDX99123	Canola	cytosol	20.77	39.58
CDX82246	Canola	endoplasmic reticulum, extracellular	38.8	37.67
CDX82252	Canola	plastid	36.07	36.77
CDY36041	Canola	plasma membrane	35.52	36.52
CDY43080	Canola	endoplasmic reticulum, vacuole	37.7	36.22
CDY50083	Canola	endoplasmic reticulum, vacuole	37.16	35.7
CDY43081	Canola	extracellular, vacuole	36.34	34.82
CDY50084	Canola	extracellular, vacuole	35.25	33.77
CDX82249	Canola	plasma membrane, vacuole	34.97	33.42
CDX82251	Canola	extracellular, golgi	36.34	33.33
CDY50282	Canola	endoplasmic reticulum, vacuole	34.97	33.25
CDX82248	Canola	endoplasmic reticulum, vacuole	39.07	32.5
CDY25415	Canola	vacuole	35.79	32.43
CDY34004	Canola	cytosol	26.5	32.33
CDY29822	Canola	vacuole	35.52	32.26
CDX82371	Canola	cytosol	26.78	31.72
CDY37377	Canola	cytosol, plastid	42.08	31.43
KRH68153	Soybean	cytosol	26.78	31.41
CDX75913	Canola	cytosol	26.5	31.39
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	31.69	31.27
CDX74582	Canola	extracellular, golgi, plastid	31.69	31.02
CDY36040	Canola	extracellular	30.33	29.37
CDY05531	Canola	cytosol	23.77	29.1
CDY05324	Canola	cytosol	23.5	28.67
CDX86065	Canola	cytosol	24.32	28.25
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	26.5	27.71
CDY67361	Canola	vacuole	25.96	27.14
CDX80557	Canola	extracellular	25.96	27.14
CDX87055	Canola	golgi, plasma membrane	24.59	27.03
CDX88229	Canola	extracellular	25.68	26.86
CDY24977	Canola	extracellular	25.41	26.5
CDX87054	Canola	extracellular	25.14	26.29
CDY05532	Canola	extracellular	25.14	26.21
CDY19775	Canola	extracellular	24.86	26.0
CDX87056	Canola	extracellular	24.32	25.95
CDY19777	Canola	extracellular	24.32	25.87
CDX81956	Canola	extracellular	21.58	25.73
CDY19776	Canola	extracellular, plasma membrane, vacuole	24.32	25.72
CDY70520	Canola	vacuole	23.22	25.6
CDX91854	Canola	cytosol	20.49	25.25
CDY39666	Canola	endoplasmic reticulum, vacuole	22.68	25.15
CDY29329	Canola	plasma membrane	32.24	25.05
CDY46265	Canola	plasma membrane	31.97	24.89
CDX74378	Canola	cytosol	19.4	24.74
CDY07146	Canola	cytosol	19.4	24.07
CDY48522	Canola	cytosol	18.31	24.01
CDY07196	Canola	cytosol	19.4	23.91
CDY51713	Canola	cytosol	19.13	23.73
CDX79503	Canola	cytosol	19.67	23.61
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	33.06	23.54
CDX84705	Canola	cytosol	19.67	23.53
CDX91855	Canola	extracellular, plasma membrane, vacuole	12.3	22.73
CDY23783	Canola	cytosol	18.03	21.43
CDY12160	Canola	cytosol	16.67	19.61
CDY60616	Canola	cytosol, mitochondrion, plastid	15.03	19.1
CDY36039	Canola	vacuole	37.7	14.98

Protein Annotations

EnsemblPlants:CDX95908	EnsemblPlantsGene:GSBRNA2T00101915001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213
PFAM:PF00917	PFscan:PS50144	ProteinID:CDX95908	ProteinID:CDX95908.1	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI0004EDC717	MapMan:35.2	:	:	:	:

Description

BnaA07g28230D

Coordinates

chrLK031892:+:15726..17399

Molecular Weight (calculated)

42081.3 Da

IEP (calculated)

8.170

GRAVY (calculated)

-0.240

Length

366 amino acids

Sequence
(BLAST)

001: MGSSSALAST IVKNWREHPP SSYSLKVHNF SQLEKSTTVS DDKYQSRPFS SGGYNWRLIV YPKGNEKDDG SGFISMYVEI DSKITTEVFA ELRFFVYNKK
101: ENKYFTIQDL EVRRFNALKT VWGLQQFLPL DTFNDLKNGY IFEGGHCEFG VDVIVASPLT NWEILSFDEK LSKPKFSWAV RKFSDLNVNS LTSDIFSMGG
201: RKWVLRLYPK GDTIADGKWL SIYLEMAASD TLKEDEKIFV QANLRVLDPL GSNHIQLQMN VWFEVQNASW GWNKFMSLAE LRKTYLDNKE HAVNVEIEFK
301: VVSATNYSPI MKLTFVVCGT QKLHKYNIPI YIPQLFNYFE QHVPLTINLA WNGVTSLIVS PTRIVG

Best Arabidopsis Sequence Match ( AT3G22080.1 )
(BLAST)

001: MMCSSVSSTT LRSWRERTPN SYSLKLQNIS QVEKSTLFSD GKYQSRLFSS GGYNWRMIIY PKGNRKDDGS GFISMYVEID STSLLTTPTT EVFADLRFFV
101: FNKKENKYYT IQHVESKLFN AFRTIWGLAQ VLPVDTFTDP KNGYIFEGDQ CEFGVDVIVA APPTNWEIHT LHEALSQPKF FWTVKNFSEL NNNVYTSGNF
201: SMRERKWVLK LYPKGDVKGD RKWLSLYLYL DQSETLKESE KIFVQAQLRV LDPRGSNHVT HKISSWYTSS NTAWGYRKFV SLAEIPKAYL DKDTLKVQID
301: VEVVSEAEFS PSMI

Arabidopsis Description

Ubiquitin carboxyl-terminal hydrolase-like protein [Source:UniProtKB/TrEMBL;Acc:F4IYY5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.