Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82252 | Canola | plastid | 97.47 | 96.66 |
| AT3G20360.1 | Thale cress | endoplasmic reticulum, extracellular | 80.06 | 78.51 |
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 59.27 | 55.97 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 58.15 | 54.33 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 57.58 | 53.81 |
| CDX83143 | Canola | cytosol | 47.19 | 52.5 |
| CDY50084 | Canola | extracellular, vacuole | 54.78 | 51.05 |
| CDX82249 | Canola | plasma membrane, vacuole | 54.78 | 50.91 |
| CDY43081 | Canola | extracellular, vacuole | 54.49 | 50.79 |
| CDY29822 | Canola | vacuole | 57.02 | 50.37 |
| CDX82251 | Canola | extracellular, golgi | 55.9 | 49.87 |
| CDY25415 | Canola | vacuole | 55.9 | 49.26 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 58.71 | 47.5 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 50.0 | 46.23 |
| CDY70350 | Canola | plastid | 21.07 | 43.86 |
| CDY36040 | Canola | extracellular | 45.79 | 43.12 |
| CDY04288 | Canola | cytosol | 16.85 | 42.86 |
| CDY34004 | Canola | cytosol | 35.67 | 42.33 |
| CDY70349 | Canola | cytosol | 30.34 | 40.91 |
| CDY44083 | Canola | cytosol | 35.67 | 40.32 |
| CDY57407 | Canola | cytosol | 34.55 | 39.68 |
| CDY58708 | Canola | cytosol, nucleus, plastid | 34.27 | 39.61 |
| CDY07338 | Canola | plastid | 32.87 | 38.74 |
| CDY04283 | Canola | plastid | 34.55 | 38.56 |
| CDY07340 | Canola | plastid | 34.27 | 38.24 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 35.39 | 38.18 |
| CDY04290 | Canola | extracellular | 26.97 | 37.35 |
| CDY28571 | Canola | cytosol | 23.6 | 37.17 |
| CDY28575 | Canola | golgi | 31.46 | 36.72 |
| CDX99123 | Canola | cytosol | 19.66 | 36.46 |
| CDX81648 | Canola | plastid | 29.21 | 36.36 |
| CDY39500 | Canola | cytosol | 32.02 | 35.62 |
| CDX95908 | Canola | plastid | 36.52 | 35.52 |
| CDX74582 | Canola | extracellular, golgi, plastid | 34.83 | 33.16 |
| CDX89595 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 46.35 | 32.1 |
| CDX93727 | Canola | endoplasmic reticulum, extracellular, golgi | 33.43 | 32.08 |
| CDY44084 | Canola | cytosol | 37.08 | 31.28 |
| CDY67101 | Canola | endoplasmic reticulum, extracellular, vacuole | 29.21 | 29.71 |
| CDY19307 | Canola | cytosol | 32.3 | 29.64 |
| CDX80557 | Canola | extracellular | 28.93 | 29.43 |
| CDX86065 | Canola | cytosol | 25.84 | 29.21 |
| CDY19775 | Canola | extracellular | 28.37 | 28.86 |
| CDX87054 | Canola | extracellular | 28.37 | 28.86 |
| CDY24977 | Canola | extracellular | 27.81 | 28.21 |
| CDY67361 | Canola | vacuole | 27.53 | 28.0 |
| CDX87055 | Canola | golgi, plasma membrane | 26.12 | 27.93 |
| CDY05532 | Canola | extracellular | 27.53 | 27.92 |
| KRH68153 | Soybean | cytosol | 24.16 | 27.56 |
| CDX82371 | Canola | cytosol | 23.88 | 27.51 |
| CDX75913 | Canola | cytosol | 23.6 | 27.18 |
| CDY19776 | Canola | extracellular, plasma membrane, vacuole | 26.4 | 27.17 |
| CDX88229 | Canola | extracellular | 26.69 | 27.14 |
| CDY05531 | Canola | cytosol | 22.75 | 27.09 |
| CDY07146 | Canola | cytosol | 22.19 | 26.78 |
| CDY05324 | Canola | cytosol | 22.47 | 26.67 |
| CDX91854 | Canola | cytosol | 21.91 | 26.26 |
| CDX87056 | Canola | extracellular | 25.28 | 26.24 |
| CDY19777 | Canola | extracellular | 25.28 | 26.16 |
| CDX74378 | Canola | cytosol | 21.07 | 26.13 |
| CDY46265 | Canola | plasma membrane | 34.27 | 25.96 |
| CDY29329 | Canola | plasma membrane | 34.27 | 25.9 |
| CDY51713 | Canola | cytosol | 21.07 | 25.42 |
| CDY70520 | Canola | vacuole | 23.6 | 25.3 |
| CDX81956 | Canola | extracellular | 21.35 | 24.76 |
| CDY37377 | Canola | cytosol, plastid | 33.15 | 24.08 |
| CDX84705 | Canola | cytosol | 20.51 | 23.86 |
| CDX91855 | Canola | extracellular, plasma membrane, vacuole | 12.92 | 23.23 |
| CDX79503 | Canola | cytosol | 18.82 | 21.97 |
| CDY23783 | Canola | cytosol | 18.54 | 21.43 |
| CDY36039 | Canola | vacuole | 55.06 | 21.28 |
| CDY07196 | Canola | cytosol | 17.7 | 21.21 |
| CDY12160 | Canola | cytosol | 17.98 | 20.58 |
| CDY48522 | Canola | cytosol | 15.17 | 19.35 |
| CDY60616 | Canola | cytosol, mitochondrion, plastid | 14.61 | 18.06 |
Protein Annotations
| EnsemblPlants:CDY36041 | EnsemblPlantsGene:GSBRNA2T00059857001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDY36041 | ProteinID:CDY36041.1 | SEG:seg | SignalP:SignalP-noTM |
| SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI0004EEA24E | UniProt:A0A078HE38 | MapMan:35.2 | : |
Description
BnaC03g41570DBnaC03g41570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HE38]
Coordinates
chrLK032366:+:75053..78651
Molecular Weight (calculated)
40726.9 Da
IEP (calculated)
9.528
GRAVY (calculated)
-0.235
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSYYIDTLC IISLLSCLFI TSSFAGPVPN VVSGSQKLIP TQISSRDSKV SQSSTVKGLR LRPPSSYSLK LDTLMKSTYT ERYDSRPFRV GKYNWTLVVY
101: PKGNKNDSGT GYISLYVVID SSTLTSPRQV VPADLRFYVF NKKEKKYFTI QDSDVWQFTI NKTMWGFPRV LPLSTFNNLK NGYLYDMDQC EFGVDIIIPP
201: IFEKSELFSV AKSFPNKRFT RFIQGFSTLP SDYLSEEFII GGISWNLRVF RNGFGAHEGK NLSLYLNLGP QELLKTKPYD KIYARAMLRV PNQGQSNYIV
301: ERPLDNWFSP QNIGWGYADF MPLSDLRDSS TGFVRNDMLV VQVEMEAIST TKYFPS
101: PKGNKNDSGT GYISLYVVID SSTLTSPRQV VPADLRFYVF NKKEKKYFTI QDSDVWQFTI NKTMWGFPRV LPLSTFNNLK NGYLYDMDQC EFGVDIIIPP
201: IFEKSELFSV AKSFPNKRFT RFIQGFSTLP SDYLSEEFII GGISWNLRVF RNGFGAHEGK NLSLYLNLGP QELLKTKPYD KIYARAMLRV PNQGQSNYIV
301: ERPLDNWFSP QNIGWGYADF MPLSDLRDSS TGFVRNDMLV VQVEMEAIST TKYFPS
001: MMSYHYINTL CIVISLLSCL FITSSFAGPV PNQENGSQKI FPTQISSRDS KVSLSSTVKG LRERPPSSYS LKMESFNTLM KSVYTERYES RPFRVGRYNW
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
Arabidopsis Description
AT3g20360/MQC12_11 [Source:UniProtKB/TrEMBL;Acc:Q8W0Z1]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.