Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 6
- plasma membrane 4
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035787.1-P | Field mustard | vacuole | 100.0 | 100.0 |
| CDY29822 | Canola | vacuole | 92.82 | 93.05 |
| CDY43081 | Canola | extracellular, vacuole | 67.33 | 71.2 |
| CDY50084 | Canola | extracellular, vacuole | 67.08 | 70.94 |
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 63.12 | 67.64 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 63.37 | 67.19 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 62.62 | 66.4 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 61.88 | 65.96 |
| CDX82251 | Canola | extracellular, golgi | 60.15 | 60.9 |
| CDX82249 | Canola | plasma membrane, vacuole | 57.67 | 60.84 |
| CDX83143 | Canola | cytosol | 47.28 | 59.69 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 55.45 | 58.18 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 63.37 | 58.18 |
| CDX82252 | Canola | plastid | 50.0 | 56.27 |
| CDY36041 | Canola | plasma membrane | 49.26 | 55.9 |
| CDY36040 | Canola | extracellular | 52.23 | 55.82 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 49.75 | 53.6 |
| CDY34004 | Canola | cytosol | 36.14 | 48.67 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 36.63 | 44.85 |
| CDY70350 | Canola | plastid | 18.81 | 44.44 |
| CDY04288 | Canola | cytosol | 15.1 | 43.57 |
| CDY44083 | Canola | cytosol | 32.67 | 41.9 |
| CDY70349 | Canola | cytosol | 26.98 | 41.29 |
| CDX99123 | Canola | cytosol | 18.56 | 39.06 |
| CDY57407 | Canola | cytosol | 29.95 | 39.03 |
| CDY58708 | Canola | cytosol, nucleus, plastid | 29.46 | 38.64 |
| CDY07338 | Canola | plastid | 28.71 | 38.41 |
| CDY28575 | Canola | golgi | 28.22 | 37.38 |
| CDY04290 | Canola | extracellular | 23.76 | 37.35 |
| CDX89595 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 46.78 | 36.77 |
| CDX93727 | Canola | endoplasmic reticulum, extracellular, golgi | 33.66 | 36.66 |
| CDY28571 | Canola | cytosol | 20.3 | 36.28 |
| CDY07340 | Canola | plastid | 28.47 | 36.05 |
| CDY04283 | Canola | plastid | 28.47 | 36.05 |
| CDX95908 | Canola | plastid | 32.43 | 35.79 |
| CDY39500 | Canola | cytosol | 28.22 | 35.62 |
| CDX81648 | Canola | plastid | 25.0 | 35.31 |
| CDX74582 | Canola | extracellular, golgi, plastid | 31.93 | 34.49 |
| CDY67101 | Canola | endoplasmic reticulum, extracellular, vacuole | 26.98 | 31.14 |
| CDX86065 | Canola | cytosol | 24.26 | 31.11 |
| CDX82371 | Canola | cytosol | 23.76 | 31.07 |
| CDX80557 | Canola | extracellular | 26.49 | 30.57 |
| CDX87055 | Canola | golgi, plasma membrane | 25.0 | 30.33 |
| CDX87054 | Canola | extracellular | 26.24 | 30.29 |
| CDY44084 | Canola | cytosol | 31.44 | 30.09 |
| CDY19775 | Canola | extracellular | 25.99 | 30.0 |
| CDX75913 | Canola | cytosol | 22.77 | 29.77 |
| CDY19776 | Canola | extracellular, plasma membrane, vacuole | 25.5 | 29.77 |
| CDY67361 | Canola | vacuole | 25.74 | 29.71 |
| CDY19307 | Canola | cytosol | 28.47 | 29.64 |
| CDY24977 | Canola | extracellular | 25.5 | 29.34 |
| CDY05532 | Canola | extracellular | 25.5 | 29.34 |
| CDX87056 | Canola | extracellular | 24.75 | 29.15 |
| CDX88229 | Canola | extracellular | 25.25 | 29.14 |
| KRH68153 | Soybean | cytosol | 22.28 | 28.85 |
| CDY19777 | Canola | extracellular | 24.5 | 28.78 |
| CDY05531 | Canola | cytosol | 21.29 | 28.76 |
| CDY70520 | Canola | vacuole | 23.51 | 28.61 |
| CDY05324 | Canola | cytosol | 21.04 | 28.33 |
| CDX91854 | Canola | cytosol | 20.3 | 27.61 |
| CDY29329 | Canola | plasma membrane | 31.93 | 27.39 |
| CDY46265 | Canola | plasma membrane | 31.68 | 27.23 |
| CDX74378 | Canola | cytosol | 19.31 | 27.18 |
| CDX81956 | Canola | extracellular | 20.54 | 27.04 |
| CDX91855 | Canola | extracellular, plasma membrane, vacuole | 12.87 | 26.26 |
| CDY07146 | Canola | cytosol | 18.56 | 25.42 |
| CDY36039 | Canola | vacuole | 57.67 | 25.3 |
| CDY51713 | Canola | cytosol | 18.32 | 25.08 |
| CDY07196 | Canola | cytosol | 17.08 | 23.23 |
| CDY37377 | Canola | cytosol, plastid | 27.23 | 22.45 |
| CDX84705 | Canola | cytosol | 16.83 | 22.22 |
| CDY12160 | Canola | cytosol | 17.08 | 22.19 |
| CDY23783 | Canola | cytosol | 16.83 | 22.08 |
| CDY48522 | Canola | cytosol | 15.1 | 21.86 |
| CDX79503 | Canola | cytosol | 16.34 | 21.64 |
| CDY60616 | Canola | cytosol, mitochondrion, plastid | 14.11 | 19.79 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.2 | UniProt:A0A078GG13 | EnsemblPlants:CDY25415 | ProteinID:CDY25415 | ProteinID:CDY25415.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00029549001 | InterPro:IPR002083 | InterPro:IPR008974 |
| InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | SMART:SM00061 |
| SUPFAM:SSF49599 | SignalP:SignalP-noTM | TMHMM:TMhelix | InterPro:TRAF-like | UniParc:UPI0002547B04 | SEG:seg |
Description
BnaA05g18690DBnaA05g18690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GG13]
Coordinates
chrLK032174:+:592942..594861
Molecular Weight (calculated)
46379.3 Da
IEP (calculated)
8.478
GRAVY (calculated)
-0.523
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSRYTKTGS AVILLFCLFI ITSASSSSFI QQVTDDFTTN LQLDDGDGPD PIQGEAHYFH THVQDGDGPD PIQGEAHYLH NHDQEVSSRD YKVSASNAIV
101: KGLRSRPPSS YSLKMESFNT LLKSKYSERY VSRPFSAAGY NWTLVVYPNG NKNDKGSGYL SLYAAIDNST LAPHEEVYVD LRFYVFNKKE KKYFTIQDTD
201: VWRYNNFKTM WGFSQVLPGY TFKSPYNGYL YDGDHCEFGV DVTTPTVFQT SELFTVANNF KTPTFTWRLL KFSTLLEDTY LSDTFSIGGR RWNIQVNPSG
301: RDKGKGKALS MYLIVNHNEE LRPFERIYVR AKLRVLNKFK FRNVERQIDN WFSRWETGRA YGWGSSEFVP LSNLKDSSKG FLVDDKLTVQ VEIEAVSTTK
401: YFPS
101: KGLRSRPPSS YSLKMESFNT LLKSKYSERY VSRPFSAAGY NWTLVVYPNG NKNDKGSGYL SLYAAIDNST LAPHEEVYVD LRFYVFNKKE KKYFTIQDTD
201: VWRYNNFKTM WGFSQVLPGY TFKSPYNGYL YDGDHCEFGV DVTTPTVFQT SELFTVANNF KTPTFTWRLL KFSTLLEDTY LSDTFSIGGR RWNIQVNPSG
301: RDKGKGKALS MYLIVNHNEE LRPFERIYVR AKLRVLNKFK FRNVERQIDN WFSRWETGRA YGWGSSEFVP LSNLKDSSKG FLVDDKLTVQ VEIEAVSTTK
401: YFPS
001: MMSYHYINTL CIVISLLSCL FITSSFAGPV PNQENGSQKI FPTQISSRDS KVSLSSTVKG LRERPPSSYS LKMESFNTLM KSVYTERYES RPFRVGRYNW
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
Arabidopsis Description
AT3g20360/MQC12_11 [Source:UniProtKB/TrEMBL;Acc:Q8W0Z1]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.