Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000640.1-P | Field mustard | cytosol | 86.33 | 80.94 |
| CDX83143 | Canola | cytosol | 86.33 | 80.94 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 55.67 | 44.06 |
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 53.0 | 42.18 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 53.0 | 41.73 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 53.0 | 41.73 |
| CDY43081 | Canola | extracellular, vacuole | 52.0 | 40.84 |
| CDY50084 | Canola | extracellular, vacuole | 50.67 | 39.79 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 43.0 | 39.09 |
| CDY29822 | Canola | vacuole | 50.33 | 37.47 |
| CDX82252 | Canola | plastid | 44.0 | 36.77 |
| CDX82249 | Canola | plasma membrane, vacuole | 46.67 | 36.55 |
| CDY25415 | Canola | vacuole | 48.67 | 36.14 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 53.0 | 36.14 |
| CDX82251 | Canola | extracellular, golgi | 48.0 | 36.09 |
| CDY36041 | Canola | plasma membrane | 42.33 | 35.67 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 45.33 | 35.32 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 44.0 | 35.2 |
| CDX89595 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 55.0 | 32.1 |
| CDY44083 | Canola | cytosol | 32.0 | 30.48 |
| CDY36040 | Canola | extracellular | 38.33 | 30.42 |
| CDY28575 | Canola | golgi | 30.67 | 30.16 |
| CDY07338 | Canola | plastid | 30.33 | 30.13 |
| CDY70349 | Canola | cytosol | 26.33 | 29.92 |
| CDY57407 | Canola | cytosol | 30.67 | 29.68 |
| CDY70350 | Canola | plastid | 16.67 | 29.24 |
| CDY58708 | Canola | cytosol, nucleus, plastid | 29.0 | 28.25 |
| CDX99123 | Canola | cytosol | 18.0 | 28.12 |
| CDY04290 | Canola | extracellular | 24.0 | 28.02 |
| CDY07340 | Canola | plastid | 29.67 | 27.9 |
| CDY04288 | Canola | cytosol | 13.0 | 27.86 |
| CDY04283 | Canola | plastid | 29.0 | 27.27 |
| CDY39500 | Canola | cytosol | 28.33 | 26.56 |
| CDX95908 | Canola | plastid | 32.33 | 26.5 |
| CDX93727 | Canola | endoplasmic reticulum, extracellular, golgi | 32.67 | 26.42 |
| CDX74582 | Canola | extracellular, golgi, plastid | 31.67 | 25.4 |
| CDY28571 | Canola | cytosol | 18.0 | 23.89 |
| CDX75913 | Canola | cytosol | 24.0 | 23.3 |
| CDX82371 | Canola | cytosol | 24.0 | 23.3 |
| CDX86065 | Canola | cytosol | 24.33 | 23.17 |
| CDY44084 | Canola | cytosol | 32.0 | 22.75 |
| CDX81648 | Canola | plastid | 21.33 | 22.38 |
| CDY19307 | Canola | cytosol | 28.67 | 22.16 |
| CDY46265 | Canola | plasma membrane | 34.33 | 21.91 |
| CDY29329 | Canola | plasma membrane | 34.0 | 21.66 |
| KRH68153 | Soybean | cytosol | 22.0 | 21.15 |
| CDY67101 | Canola | endoplasmic reticulum, extracellular, vacuole | 24.33 | 20.86 |
| CDX80557 | Canola | extracellular | 24.0 | 20.57 |
| CDX91854 | Canola | cytosol | 20.33 | 20.54 |
| CDX87056 | Canola | extracellular | 23.0 | 20.12 |
| CDY05531 | Canola | cytosol | 20.0 | 20.07 |
| CDY19777 | Canola | extracellular | 23.0 | 20.06 |
| CDX74378 | Canola | cytosol | 19.0 | 19.86 |
| CDX87055 | Canola | golgi, plasma membrane | 22.0 | 19.82 |
| CDX88229 | Canola | extracellular | 23.0 | 19.71 |
| CDX87054 | Canola | extracellular | 23.0 | 19.71 |
| CDY19775 | Canola | extracellular | 23.0 | 19.71 |
| CDY24977 | Canola | extracellular | 23.0 | 19.66 |
| CDY05532 | Canola | extracellular | 23.0 | 19.66 |
| CDY19776 | Canola | extracellular, plasma membrane, vacuole | 22.67 | 19.65 |
| CDY67361 | Canola | vacuole | 22.67 | 19.43 |
| CDY05324 | Canola | cytosol | 19.33 | 19.33 |
| CDX79503 | Canola | cytosol | 19.0 | 18.69 |
| CDX84705 | Canola | cytosol | 18.67 | 18.3 |
| CDX91855 | Canola | extracellular, plasma membrane, vacuole | 11.33 | 17.17 |
| CDY70520 | Canola | vacuole | 19.0 | 17.17 |
| CDY60616 | Canola | cytosol, mitochondrion, plastid | 16.33 | 17.01 |
| CDY12160 | Canola | cytosol | 17.33 | 16.72 |
| CDY07146 | Canola | cytosol | 15.67 | 15.93 |
| CDY51713 | Canola | cytosol | 15.67 | 15.93 |
| CDY37377 | Canola | cytosol, plastid | 26.0 | 15.92 |
| CDY36039 | Canola | vacuole | 47.67 | 15.53 |
| CDY23783 | Canola | cytosol | 15.67 | 15.26 |
| CDX81956 | Canola | extracellular | 15.0 | 14.66 |
| CDY07196 | Canola | cytosol | 14.33 | 14.48 |
| CDY48522 | Canola | cytosol | 13.0 | 13.98 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.2 | UniProt:A0A078H941 | EnsemblPlants:CDY34004 | ProteinID:CDY34004 | ProteinID:CDY34004.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00055859001 | InterPro:IPR002083 | InterPro:IPR008974 |
| InterPro:MATH/TRAF_dom | PFAM:PF00917 | PFscan:PS50144 | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | SMART:SM00061 |
| SUPFAM:SSF49599 | InterPro:TRAF-like | UniParc:UPI0004EB71AF | SEG:seg | : | : |
Description
BnaC03g28110DBnaC03g28110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H941]
Coordinates
chrLK032326:-:31096..32562
Molecular Weight (calculated)
34149.2 Da
IEP (calculated)
9.676
GRAVY (calculated)
-0.459
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MHYLQKHQEI SSRDYKLSSS NTLKGLRERP PSTYSLKMEA FHRVLNSTEY YETRPFSAGG FNWTLRVYPN GNNKDGGSGY LSLYVAIDKS SLDASAHQEV
101: YADLRFYIFN RNGSRGSTSP SKIPMYSDSM PSKRCGDSLR FSLLIRSKTY LYDGDHSEFG VDVTVPKPFE KSELLSFSKR SDRFTWTIRG FSTLTQYTYS
201: DVISFAGRKW QLGINPSGSG SGSGKAVSLF FHLLANQRTG AYEAVYVLAK FQVLNQLKLG NIRMELENWY GITSFGWGFS EFVSFDDLRD SSKVSLWMIH
101: YADLRFYIFN RNGSRGSTSP SKIPMYSDSM PSKRCGDSLR FSLLIRSKTY LYDGDHSEFG VDVTVPKPFE KSELLSFSKR SDRFTWTIRG FSTLTQYTYS
201: DVISFAGRKW QLGINPSGSG SGSGKAVSLF FHLLANQRTG AYEAVYVLAK FQVLNQLKLG NIRMELENWY GITSFGWGFS EFVSFDDLRD SSKVSLWMIH
001: MMSYHYINTL CIVISLLSCL FITSSFAGPV PNQENGSQKI FPTQISSRDS KVSLSSTVKG LRERPPSSYS LKMESFNTLM KSVYTERYES RPFRVGRYNW
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK
Arabidopsis Description
AT3g20360/MQC12_11 [Source:UniProtKB/TrEMBL;Acc:Q8W0Z1]
SUBAcon: [extracellular,endoplasmic reticulum]
SUBAcon: [extracellular,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.