CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05532	Canola	extracellular	98.86	98.86
CDY67361	Canola	vacuole	88.03	88.29
CDX88229	Canola	extracellular	86.61	86.86
CDY70520	Canola	vacuole	81.77	86.45
CDY05531	Canola	cytosol	73.5	86.29
CDX87054	Canola	extracellular	86.04	86.29
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	85.75	86.0
CDY19775	Canola	extracellular	84.9	85.14
CDX80557	Canola	extracellular	84.33	84.57
CDY05324	Canola	cytosol	69.52	81.33
CDX81956	Canola	extracellular	70.37	80.46
AT5G26320.1	Thale cress	vacuole	71.23	71.02
CDX87056	Canola	extracellular	67.81	69.39
CDY19777	Canola	extracellular	67.52	68.9
CDX87055	Canola	golgi, plasma membrane	63.53	66.97
CDY19776	Canola	extracellular, plasma membrane, vacuole	64.96	65.9
CDY04288	Canola	cytosol	13.68	34.29
CDY70350	Canola	plastid	15.95	32.75
CDY70349	Canola	cytosol	22.79	30.3
KRH68153	Soybean	cytosol	26.5	29.81
CDX82246	Canola	endoplasmic reticulum, extracellular	31.91	29.71
CDY50084	Canola	extracellular, vacuole	31.91	29.32
CDY43081	Canola	extracellular, vacuole	31.91	29.32
CDY44083	Canola	cytosol	26.21	29.21
CDX99123	Canola	cytosol	15.95	29.17
CDY43080	Canola	endoplasmic reticulum, vacuole	31.34	28.87
CDY04290	Canola	extracellular	21.08	28.79
CDX75913	Canola	cytosol	25.07	28.48
CDY50083	Canola	endoplasmic reticulum, vacuole	30.77	28.35
CDX82371	Canola	cytosol	24.79	28.16
CDX82252	Canola	plastid	28.77	28.13
CDY36041	Canola	plasma membrane	28.21	27.81
CDX83143	Canola	cytosol	25.07	27.5
CDX82249	Canola	plasma membrane, vacuole	29.91	27.42
CDY07338	Canola	plastid	23.36	27.15
CDY58708	Canola	cytosol, nucleus, plastid	23.65	26.95
CDY28575	Canola	golgi	23.08	26.56
CDY04283	Canola	plastid	23.93	26.33
CDX82251	Canola	extracellular, golgi	29.91	26.32
CDY23783	Canola	cytosol	23.08	26.3
CDX82248	Canola	endoplasmic reticulum, vacuole	32.76	26.14
CDY57407	Canola	cytosol	23.08	26.13
CDY07146	Canola	cytosol	21.94	26.1
CDY36040	Canola	extracellular	27.92	25.93
CDX81648	Canola	plastid	21.08	25.87
CDY50282	Canola	endoplasmic reticulum, vacuole	28.21	25.71
CDY07340	Canola	plastid	23.36	25.71
CDY39500	Canola	cytosol	23.36	25.62
CDY29822	Canola	vacuole	29.34	25.56
CDY25415	Canola	vacuole	29.34	25.5
CDX95908	Canola	plastid	26.5	25.41
CDY28571	Canola	cytosol	16.24	25.22
CDY51713	Canola	cytosol	21.08	25.08
CDX74378	Canola	cytosol	20.23	24.74
CDX91854	Canola	cytosol	20.8	24.58
CDX84705	Canola	cytosol	21.37	24.51
CDY12160	Canola	cytosol	21.65	24.44
CDX79503	Canola	cytosol	21.08	24.26
CDY34004	Canola	cytosol	19.66	23.0
CDY60616	Canola	cytosol, mitochondrion, plastid	18.8	22.92
CDX74582	Canola	extracellular, golgi, plastid	23.93	22.46
CDY39666	Canola	endoplasmic reticulum, vacuole	20.8	22.12
CDX91855	Canola	extracellular, plasma membrane, vacuole	12.25	21.72
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	22.51	21.29
CDX86065	Canola	cytosol	19.09	21.27
CDY07196	Canola	cytosol	17.95	21.21
CDY19307	Canola	cytosol	22.79	20.62
CDY44084	Canola	cytosol	24.79	20.62
CDY48522	Canola	cytosol	15.95	20.07
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	25.93	17.7
CDY46265	Canola	plasma membrane	23.08	17.23
CDY37377	Canola	cytosol, plastid	23.65	16.94
CDY29329	Canola	plasma membrane	22.22	16.56
CDY36039	Canola	vacuole	30.2	11.51

Protein Annotations

EnsemblPlants:CDY24977	EnsemblPlantsGene:GSBRNA2T00028780001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF214
PFAM:PF00917	PFscan:PS50144	ProteinID:CDY24977	ProteinID:CDY24977.1	SignalP:SignalP-noTM	SMART:SM00061
SUPFAM:SSF49599	TMHMM:TMhelix	UniParc:UPI0004EF01B2	UniProt:A0A078GIF3	MapMan:35.2	:

Description

BnaC02g40310DBnaC02g40310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIF3]

Coordinates

chrLK032167:-:3443..5628

Molecular Weight (calculated)

38972.3 Da

IEP (calculated)

7.423

GRAVY (calculated)

-0.085

Length

351 amino acids

Sequence
(BLAST)

001: MDSQQRSLCF ISLAFLFITC SSAEFLIQQV TQGRGTENNS SSSLDANLGV TRVLRDERPS SKIVTIAGYS VIKGRGEPYE SSVFEAAGYK WRLVLYVVGN
101: ANDGGAGYIS LYVRIEETES LPFGWELNNV DLKLFVHNPK LNKYLTVTDG ALKRFNGVKK ELGFGQLIAL STFENTNEGY IVQDTCSFGA EILIVKPAEV
201: QEKVTFISNP PDNVFTWKIL RFSNLEDKFY YSADFLVGDR YWRLGFNPKG DGGGRPHALP IFLFAQGFGP NSVATNTWGA VNLRLKNQRS TNHRQIYSAA
301: WYPIRSGYGV GVNNIILLAD LNDASKGYLV NDAIIFEAEM VKVSVTNIVS V

Best Arabidopsis Sequence Match ( AT5G26280.1 )
(BLAST)

001: MNNQKWSIGF ISLAFLFITS SSAEFIIQQV TKGRGIEYNS SYSLEENLGV TRELREERPS SKIVTITSFS VIKGRGEPYE SSVFEAAGYK WRLVLYVNGN
101: KNDGGNDHIS LYARIEETNS LPLGWEVNVD LKLFVHNGKL HKYLTVTDGL VKRYNNAKKE WGFGQLIPRS TFYNANEGYL DQDTGSFGAE IFIVKPAQQQ
201: EKVTFISNPP NNVFTWKILR FSTLEDKFYY SDDFLVEDRY WRLGFNPKGD GGGRPHALPI FLFAQGHKAN AVATNTWGAV NLRLKNQRST NHRQIYSAAW
301: YPIGSGYGVG VNNIILLADL NDASKGYLVN DAIIFEAEMV KVSITNIVSA

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT5G26280]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.