CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07340	Canola	plastid	95.61	95.61
CDY04290	Canola	extracellular	61.76	76.65
CDY07338	Canola	plastid	66.77	70.53
CDY70350	Canola	plastid	36.36	67.84
CDY44083	Canola	cytosol	60.5	61.27
CDY04288	Canola	cytosol	25.71	58.57
CDY28575	Canola	golgi	55.8	58.36
CDY70349	Canola	cytosol	48.28	58.33
CDY58708	Canola	cytosol, nucleus, plastid	54.86	56.82
CDX81648	Canola	plastid	49.84	55.59
CDY28571	Canola	cytosol	38.56	54.42
CDX95908	Canola	plastid	61.44	53.55
CDY57407	Canola	cytosol	47.34	48.71
CDY44084	Canola	cytosol	63.95	48.34
CDY39500	Canola	cytosol	43.57	43.44
CDY19307	Canola	cytosol	43.26	35.57
CDY36041	Canola	plasma membrane	38.56	34.55
CDX82252	Canola	plastid	38.87	34.54
CDX83143	Canola	cytosol	33.86	33.75
CDY43081	Canola	extracellular, vacuole	39.19	32.72
CDY43080	Canola	endoplasmic reticulum, vacuole	38.56	32.28
CDY50083	Canola	endoplasmic reticulum, vacuole	38.56	32.28
CDY50084	Canola	extracellular, vacuole	38.56	32.2
CDX82246	Canola	endoplasmic reticulum, extracellular	37.93	32.1
CDX99123	Canola	cytosol	18.5	30.73
CDX82249	Canola	plasma membrane, vacuole	36.05	30.03
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	34.48	29.65
CDY34004	Canola	cytosol	27.27	29.0
CDX82251	Canola	extracellular, golgi	36.05	28.82
CDX74582	Canola	extracellular, golgi, plastid	33.54	28.61
CDY25415	Canola	vacuole	36.05	28.47
KRH68153	Soybean	cytosol	27.59	28.21
CDY50282	Canola	endoplasmic reticulum, vacuole	33.86	28.05
CDY29822	Canola	vacuole	35.11	27.79
CDX82248	Canola	endoplasmic reticulum, vacuole	38.24	27.73
CDY37377	Canola	cytosol, plastid	41.69	27.14
CDX75913	Canola	cytosol	26.02	26.86
CDX82371	Canola	cytosol	26.02	26.86
CDY39666	Canola	endoplasmic reticulum, vacuole	26.96	26.06
CDX86065	Canola	cytosol	25.71	26.03
CDY36040	Canola	extracellular	29.47	24.87
CDY05531	Canola	cytosol	23.2	24.75
CDY05324	Canola	cytosol	22.88	24.33
CDY67361	Canola	vacuole	26.65	24.29
CDY24977	Canola	extracellular	26.33	23.93
CDX91854	Canola	cytosol	22.26	23.91
CDX88229	Canola	extracellular	26.02	23.71
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	26.02	23.71
CDX74378	Canola	cytosol	21.32	23.69
CDY05532	Canola	extracellular	26.02	23.65
CDX87054	Canola	extracellular	25.39	23.14
CDX80557	Canola	extracellular	25.08	22.86
CDY19775	Canola	extracellular	25.08	22.86
CDX91855	Canola	extracellular, plasma membrane, vacuole	14.11	22.73
CDY07196	Canola	cytosol	21.0	22.56
CDX87056	Canola	extracellular	24.14	22.45
CDY19777	Canola	extracellular	24.14	22.38
CDY46265	Canola	plasma membrane	32.92	22.34
CDY29329	Canola	plasma membrane	32.92	22.29
CDY07146	Canola	cytosol	20.38	22.03
CDX87055	Canola	golgi, plasma membrane	22.88	21.92
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	34.8	21.6
CDY51713	Canola	cytosol	19.75	21.36
CDX81956	Canola	extracellular	20.38	21.17
CDY48522	Canola	cytosol	18.5	21.15
CDY19776	Canola	extracellular, plasma membrane, vacuole	22.88	21.1
CDY70520	Canola	vacuole	21.94	21.08
CDX84705	Canola	cytosol	19.75	20.59
CDX79503	Canola	cytosol	19.44	20.33
CDY23783	Canola	cytosol	19.44	20.13
CDY12160	Canola	cytosol	19.12	19.61
CDY60616	Canola	cytosol, mitochondrion, plastid	16.61	18.4
CDY36039	Canola	vacuole	36.99	12.81

Protein Annotations

EnsemblPlants:CDY04283	EnsemblPlantsGene:GSBRNA2T00118040001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213
PFAM:PF00917	PFscan:PS50144	ProteinID:CDY04283	ProteinID:CDY04283.1	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI0004EE0549	MapMan:35.2	:	:	:	:

Description

BnaC06g25320D

Coordinates

chrLK031950:+:1005180..1006750

Molecular Weight (calculated)

36809.4 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.436

Length

319 amino acids

Sequence
(BLAST)

001: MGSNSSTAAS TEVSTIVKHW REHPPSSYSL KIHNFSELEK STALSDNKYQ SRLFTYGGYN WRLIIYPKGN GEDNVRGFIS MYVEIDSESL MLFTPPTEIF
101: AELRFFVYNK KENKYFTIQD VGVKPFSELK TRWGLQQGGQ CEFGVDVIVA PSLTNWEVLS FTKKYFDPKF SWTIKDFSEL KEDVQKSNSF PRGGKEWVLA
201: LYPKGALGAD GKWLSIFLCL ADSDKPEADE KIFVQARFRV LNPVGSYHFE YPLETWYTEQ TPAWGWAQFL PLAELPKVYL DKEDALKVEI EFKVVSETKY
301: SFKEADPLEK DWVQLTPES

Best Arabidopsis Sequence Match ( AT1G69650.1 )
(BLAST)

001: MGASCSAPVS STIKKNWRDH PPSSYSLKIH NFSQLEKTTS FSGHKYQSRL FSSGDITGNV KDNGSGFISM YVELDSSSLM ESKPPTEVFA ELRFFVYNKK
101: QNKYFTKDVE IKRFDALKMV WGLPKGNECE FGVDVIVAPP LTNWEILSFH DEKLSYPKVT WSVKNFSQWK ENECSKPNRF SIGGREWVLK LFPKGNSRAK
201: GKYLSVFLYL ADNETLKPDE KIFTQVVVRI LNPLGSNHVA SRLNYWHKGS NFGYGWCKFL SLDKIRKTYL DKEDTLMIEA EFEVVSATKF STII

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9FWZ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.