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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY04768
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G00780.1 CDY04768 AT1G22920.1 21798944
AT4G00780.1 CDY21400 AT1G22920.1 21798944
AT4G00780.1 CDY25761 AT1G22920.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51713 Canola cytosol 97.29 97.29
AT4G00780.1 Thale cress cytosol 70.17 69.23
AT4G01390.1 Thale cress cytosol 66.78 65.67
CDX91854 Canola cytosol 61.36 60.94
CDX74378 Canola cytosol 57.29 58.88
CDY07196 Canola cytosol 57.63 57.24
CDY48522 Canola cytosol 51.53 54.48
CDX91855 Canola extracellular, plasma membrane, vacuole 36.27 54.04
CDX99123 Canola cytosol 19.32 29.69
CDX79503 Canola cytosol 30.17 29.18
CDX84705 Canola cytosol 29.83 28.76
CDY23783 Canola cytosol 28.81 27.6
CDY12160 Canola cytosol 28.81 27.33
CDY60616 Canola cytosol, mitochondrion, plastid 25.08 25.69
CDY28571 Canola cytosol 19.66 25.66
CDX82371 Canola cytosol 26.78 25.57
CDX75913 Canola cytosol 26.78 25.57
CDY44083 Canola cytosol 26.1 24.44
KRH68153 Soybean cytosol 25.42 24.04
CDY05531 Canola cytosol 23.73 23.41
CDY05324 Canola cytosol 23.73 23.33
CDY28575 Canola golgi 24.07 23.28
CDY70349 Canola cytosol 20.68 23.11
CDY19775 Canola extracellular 26.78 22.57
CDX80557 Canola extracellular 26.78 22.57
CDY67361 Canola vacuole 26.78 22.57
CDY67101 Canola endoplasmic reticulum, extracellular, vacuole 26.78 22.57
CDX87054 Canola extracellular 26.78 22.57
CDX87055 Canola golgi, plasma membrane 25.42 22.52
CDY70520 Canola vacuole 25.08 22.29
CDX88229 Canola extracellular 26.44 22.29
CDY19776 Canola extracellular, plasma membrane, vacuole 26.1 22.25
CDY36041 Canola plasma membrane 26.78 22.19
CDX82252 Canola plastid 26.78 22.01
CDY24977 Canola extracellular 26.1 21.94
CDX87056 Canola extracellular 25.42 21.87
CDY07338 Canola plastid 22.37 21.85
CDY05532 Canola extracellular 25.76 21.65
CDY19777 Canola extracellular 25.08 21.51
CDX82246 Canola endoplasmic reticulum, extracellular 27.46 21.49
CDX81956 Canola extracellular 22.03 21.17
CDY70350 Canola plastid 12.2 21.05
CDX93727 Canola endoplasmic reticulum, extracellular, golgi 26.44 21.02
CDX81648 Canola plastid 20.34 20.98
CDY50084 Canola extracellular, vacuole 27.12 20.94
CDY57407 Canola cytosol 21.69 20.65
CDY04290 Canola extracellular 17.97 20.62
CDY50083 Canola endoplasmic reticulum, vacuole 26.44 20.47
CDY43080 Canola endoplasmic reticulum, vacuole 26.44 20.47
CDY43081 Canola extracellular, vacuole 26.44 20.42
CDY04283 Canola plastid 22.03 20.38
CDY07340 Canola plastid 22.03 20.38
CDX86065 Canola cytosol 21.69 20.32
CDX74582 Canola extracellular, golgi, plastid 25.42 20.05
CDY04288 Canola cytosol 9.49 20.0
CDX82251 Canola extracellular, golgi 26.78 19.8
CDY58708 Canola cytosol, nucleus, plastid 20.34 19.48
CDX95908 Canola plastid 24.07 19.4
CDX82249 Canola plasma membrane, vacuole 25.08 19.32
CDY50282 Canola endoplasmic reticulum, vacuole 25.08 19.22
CDY39500 Canola cytosol 20.68 19.06
CDY36040 Canola extracellular 24.41 19.05
CDY29822 Canola vacuole 25.76 18.86
CDY25415 Canola vacuole 25.42 18.56
CDX83143 Canola cytosol 20.0 18.44
CDX82248 Canola endoplasmic reticulum, vacuole 27.46 18.41
CDY39666 Canola endoplasmic reticulum, vacuole 20.0 17.88
CDY44084 Canola cytosol 25.08 17.54
CDY34004 Canola cytosol 15.93 15.67
CDY46265 Canola plasma membrane 24.41 15.32
CDY29329 Canola plasma membrane 24.41 15.29
CDY19307 Canola cytosol 19.66 14.95
CDY37377 Canola cytosol, plastid 21.02 12.65
CDX89595 Canola endoplasmic reticulum, plasma membrane, vacuole 22.03 12.65
CDY36039 Canola vacuole 24.75 7.93
Protein Annotations
EnsemblPlants:CDY07146EnsemblPlantsGene:GSBRNA2T00123499001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF213
PFAM:PF00917PFscan:PS50144ProteinID:CDY07146ProteinID:CDY07146.1SMART:SM00061SUPFAM:SSF49599
UniParc:UPI0004EEFC31MapMan:35.2::::
Description
BnaCnng01610D
Coordinates
chrLK031975:+:510696..512618
Molecular Weight (calculated)
33871.7 Da
IEP (calculated)
8.634
GRAVY (calculated)
-0.322
Length
295 amino acids
Sequence
(BLAST)
001: MSRPIPIEEM VRVFKSRHRT SHLFKIDNFS LFKKYQLEKV NSSVFDLGGH KWTLCVFPNG RKNASGHYVS IFLMSQASVN VKIEYELFVV SQLEQKWESY
101: GHREFGIYPK PTGKGNPKLI SLVDLERNGY LIGDSCMCGV KLHGIEPAES GTAECFSLIE NPLNHKVTWM MTRFSSFEPE KAHHSHEFVV GNRKWRIQVH
201: PRGFGEEKDE SFSVYLLGEG FINNASKTKT YAKFKLRVLD QVNRNHVEKT CSGWLETSKG FADFMCLTKL VEPYLVNDKL YVGVDFEVVS VATYC
Best Arabidopsis Sequence Match ( AT4G00780.1 )
(BLAST)
001: MSRPIPIEEM VRLFKIRHTT SHLFKIDNFS LLKKHGIEKV ESSVFDLAGH KWKLSVYPNG HKNAKGTHVS MFLVNQVPVN DMPTYELLVV SQLERKWHTH
101: GRDEFDINPE PASEGFLRFI SLADLERKGF LIGDCCMFGV KFHGIEPANP GTAECFSLIE KPLNHKVTWM MSKFSSFNPG KAHQSNEFVV GTRKWRLEVH
201: PRGYMDEKDK SFSVYLSAEG FVNNAPMTKT YAKFKLRVLD QVSWNHVEES GLSWFDAEPS DQSGFADFMP LGKLNEPYLV KDKLYVGVEF EVVSTTYYC
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ38]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.