CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44083	Canola	cytosol	83.28	80.63
CDY58708	Canola	cytosol, nucleus, plastid	63.93	63.31
CDY04290	Canola	extracellular	51.15	60.7
CDY07338	Canola	plastid	60.0	60.6
CDY70349	Canola	cytosol	51.8	59.85
CDY04283	Canola	plastid	58.36	55.8
CDY07340	Canola	plastid	58.03	55.49
CDY28571	Canola	cytosol	40.66	54.87
CDY70350	Canola	plastid	30.49	54.39
CDX95908	Canola	plastid	62.62	52.19
CDX81648	Canola	plastid	47.21	50.35
CDY57407	Canola	cytosol	50.49	49.68
CDY44084	Canola	cytosol	68.52	49.53
CDY04288	Canola	cytosol	21.64	47.14
CDY39500	Canola	cytosol	48.2	45.94
CDY19307	Canola	cytosol	50.16	39.43
CDX83143	Canola	cytosol	35.41	33.75
CDY43081	Canola	extracellular, vacuole	39.67	31.68
CDY36041	Canola	plasma membrane	36.72	31.46
CDY50084	Canola	extracellular, vacuole	39.34	31.41
CDX82252	Canola	plastid	36.72	31.2
CDY50083	Canola	endoplasmic reticulum, vacuole	38.69	30.97
CDY43080	Canola	endoplasmic reticulum, vacuole	38.69	30.97
CDY34004	Canola	cytosol	30.16	30.67
CDX82246	Canola	endoplasmic reticulum, extracellular	37.7	30.5
CDX82249	Canola	plasma membrane, vacuole	37.7	30.03
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	35.74	29.38
CDX99123	Canola	cytosol	18.36	29.17
CDY25415	Canola	vacuole	37.38	28.22
CDY50282	Canola	endoplasmic reticulum, vacuole	35.41	28.05
CDY29822	Canola	vacuole	37.05	28.04
CDX74582	Canola	extracellular, golgi, plastid	34.1	27.81
CDX82251	Canola	extracellular, golgi	36.07	27.57
CDY37377	Canola	cytosol, plastid	43.61	27.14
CDX82248	Canola	endoplasmic reticulum, vacuole	38.36	26.59
CDX82371	Canola	cytosol	26.89	26.54
CDX75913	Canola	cytosol	26.89	26.54
KRH68153	Soybean	cytosol	26.89	26.28
CDX91854	Canola	cytosol	24.26	24.92
CDX86065	Canola	cytosol	25.57	24.76
CDX74378	Canola	cytosol	23.28	24.74
CDY07196	Canola	cytosol	23.93	24.58
CDY05531	Canola	cytosol	23.61	24.08
CDY36040	Canola	extracellular	29.84	24.07
CDY07146	Canola	cytosol	23.28	24.07
CDY05324	Canola	cytosol	23.61	24.0
CDY39666	Canola	endoplasmic reticulum, vacuole	25.9	23.94
CDY51713	Canola	cytosol	22.95	23.73
CDY48522	Canola	cytosol	21.64	23.66
CDX87055	Canola	golgi, plasma membrane	25.57	23.42
CDX91855	Canola	extracellular, plasma membrane, vacuole	15.08	23.23
CDY24977	Canola	extracellular	26.56	23.08
CDX87056	Canola	extracellular	25.9	23.03
CDY19777	Canola	extracellular	25.9	22.97
CDX87054	Canola	extracellular	26.23	22.86
CDY05532	Canola	extracellular	26.23	22.79
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	25.9	22.57
CDY67361	Canola	vacuole	25.9	22.57
CDX88229	Canola	extracellular	25.9	22.57
CDY19775	Canola	extracellular	25.9	22.57
CDY19776	Canola	extracellular, plasma membrane, vacuole	25.25	22.25
CDY46265	Canola	plasma membrane	34.1	22.13
CDY29329	Canola	plasma membrane	34.1	22.08
CDX80557	Canola	extracellular	25.25	22.0
CDX79503	Canola	cytosol	21.31	21.31
CDX84705	Canola	cytosol	20.66	20.59
CDY12160	Canola	cytosol	20.98	20.58
CDX81956	Canola	extracellular	20.33	20.2
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	33.77	20.04
CDY70520	Canola	vacuole	21.64	19.88
CDY60616	Canola	cytosol, mitochondrion, plastid	18.36	19.44
CDY23783	Canola	cytosol	18.36	18.18
CDY36039	Canola	vacuole	38.03	12.6

Protein Annotations

EnsemblPlants:CDY28575	EnsemblPlantsGene:GSBRNA2T00040540001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213
PFAM:PF00917	PFscan:PS50144	ProteinID:CDY28575	ProteinID:CDY28575.1	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI0004EE137B	UniProt:A0A078GPX2	MapMan:35.2	:	:	:

Description

BnaC02g19440DBnaC02g19440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPX2]

Coordinates

chrLK032222:-:382770..389351

Molecular Weight (calculated)

35378.1 Da

IEP (calculated)

8.754

GRAVY (calculated)

-0.495

Length

305 amino acids

Sequence
(BLAST)

001: MLKSTLKLFL PPNILPLSKQ LGNATRMSTG SEVISTIVKK WREHPPSSYC LKVDNFKQLE NFTTSSDDKY ESRLFSSCGY NWKLIVYPKG NKKDNGKGFI
101: SMYVEIDSKS FISEPQCEVF AELIFFVYNK KENKYFTIQD QCEFGVDVVV PSPLTSWEIL SFNKKLQKPK FSWTVKKFSQ LKEHEYTSNK FSVGERNWVL
201: KLYPKGYSRE DDKWLSVFLH LADNGTAKAD EKIFVQANLR VLDPHGSNHK AYQMNTWQIG KNLGWGWDEF LSLEELRKAY LDKEDALNVE AEFEVVSATK
301: YSPII

Best Arabidopsis Sequence Match ( AT3G22085.1 )
(BLAST)

001: MGSTVLDANP STLREHPPSS YSIKFENIAE LDDGKYESSL FAAGGYNWRL VIYPKGNAKD EGSGFISMYV EIDSTNLLSS PLTGVFAYLV FFVYNKKTDK
101: YFTIKDSELK RFNAFRTVWG LSQGDQCEFG VDVLVAPSLT KWEVVSFNQK ILDPKFSWSL KKFKELKEEL YNSDKFLVGG RQWFLKVHPK GVKARDNSLS
201: IYVYLSESET LNAEEKIYTR VHLRVLDPFG SIHQAGQCNF WRTNTNKNQG YGWPTFASLD KVREKYLDNE GSLNIEIEFA VVSSTKYSPV N

Arabidopsis Description

TRAF family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.