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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 1
  • mitochondrion 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra031322.1-P Field mustard cytosol, plastid 98.39 98.39
CDY70350 Canola plastid 32.58 59.06
CDY44083 Canola cytosol 56.77 55.87
CDY70349 Canola cytosol 46.77 54.92
CDY04288 Canola cytosol 24.19 53.57
CDY04290 Canola extracellular 44.19 53.31
AT3G22085.1 Thale cress cytosol 48.06 51.2
CDY07338 Canola plastid 49.35 50.66
CDY28575 Canola golgi 49.68 50.49
CDY58708 Canola cytosol, nucleus, plastid 50.0 50.32
CDY28571 Canola cytosol 35.81 49.12
CDY39500 Canola cytosol 49.35 47.81
CDY04283 Canola plastid 48.71 47.34
CDY07340 Canola plastid 48.39 47.02
CDX81648 Canola plastid 43.23 46.85
CDY37377 Canola cytosol, plastid 71.94 45.51
CDX95908 Canola plastid 52.26 44.26
CDY19307 Canola cytosol 49.35 39.43
CDY44084 Canola cytosol 52.9 38.86
CDX83143 Canola cytosol 39.03 37.81
CDX82252 Canola plastid 40.32 34.82
CDY36041 Canola plasma membrane 39.68 34.55
CDX82246 Canola endoplasmic reticulum, extracellular 40.97 33.69
CDY43080 Canola endoplasmic reticulum, vacuole 40.0 32.55
CDY50083 Canola endoplasmic reticulum, vacuole 40.0 32.55
CDY50084 Canola extracellular, vacuole 38.71 31.41
CDY43081 Canola extracellular, vacuole 38.39 31.15
CDY34004 Canola cytosol 29.68 30.67
CDY25415 Canola vacuole 39.03 29.95
CDX99123 Canola cytosol 18.39 29.69
CDY29822 Canola vacuole 38.39 29.53
KRH68153 Soybean cytosol 29.68 29.49
CDY50282 Canola endoplasmic reticulum, vacuole 36.45 29.35
CDX93727 Canola endoplasmic reticulum, extracellular, golgi 34.84 29.11
CDX82251 Canola extracellular, golgi 37.42 29.07
CDX82249 Canola plasma membrane, vacuole 35.81 28.98
CDX75913 Canola cytosol 28.39 28.48
CDX82248 Canola endoplasmic reticulum, vacuole 40.0 28.18
CDX82371 Canola cytosol 28.06 28.16
CDX74582 Canola extracellular, golgi, plastid 33.55 27.81
CDY36040 Canola extracellular 31.61 25.93
CDY05531 Canola cytosol 23.23 24.08
CDY39666 Canola endoplasmic reticulum, vacuole 25.48 23.94
CDY67361 Canola vacuole 26.13 23.14
CDX87055 Canola golgi, plasma membrane 24.84 23.12
CDY24977 Canola extracellular 26.13 23.08
CDY05324 Canola cytosol 22.26 23.0
CDX87054 Canola extracellular 25.81 22.86
CDX88229 Canola extracellular 25.81 22.86
CDY05532 Canola extracellular 25.81 22.79
CDY67101 Canola endoplasmic reticulum, extracellular, vacuole 25.48 22.57
CDY19775 Canola extracellular 25.48 22.57
CDX87056 Canola extracellular 24.84 22.45
CDY19777 Canola extracellular 24.84 22.38
CDX89595 Canola endoplasmic reticulum, plasma membrane, vacuole 36.45 21.98
CDY19776 Canola extracellular, plasma membrane, vacuole 24.52 21.97
CDX86065 Canola cytosol 22.26 21.9
CDX80557 Canola extracellular 24.52 21.71
CDY07146 Canola cytosol 20.65 21.69
CDY46265 Canola plasma membrane 32.58 21.49
CDY51713 Canola cytosol 20.32 21.36
CDY29329 Canola plasma membrane 32.26 21.23
CDY70520 Canola vacuole 21.94 20.48
CDX74378 Canola cytosol 18.71 20.21
CDX91854 Canola cytosol 19.35 20.2
CDX81956 Canola extracellular 19.35 19.54
CDY07196 Canola cytosol 18.06 18.86
CDX79503 Canola cytosol 18.06 18.36
CDX84705 Canola cytosol 18.06 18.3
CDX91855 Canola extracellular, plasma membrane, vacuole 11.61 18.18
CDY48522 Canola cytosol 15.48 17.2
CDY23783 Canola cytosol 16.45 16.56
CDY12160 Canola cytosol 16.45 16.4
CDY60616 Canola cytosol, mitochondrion, plastid 14.19 15.28
CDY36039 Canola vacuole 36.45 12.27
Protein Annotations
EnsemblPlants:CDY57407EnsemblPlantsGene:GSBRNA2T00020947001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF213
PFAM:PF00917PFscan:PS50144ProteinID:CDY57407ProteinID:CDY57407.1SMART:SM00061SUPFAM:SSF49599
UniParc:UPI0004EEE2C1UniProt:A0A078J427MapMan:35.2:::
Description
BnaA05g36220DBnaA05g36220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J427]
Coordinates
chrLK033572:-:30681..31966
Molecular Weight (calculated)
35690.5 Da
IEP (calculated)
8.624
GRAVY (calculated)
-0.397
Length
310 amino acids
Sequence
(BLAST)
001: MLKTEKTCVV SDSTITKFGV RPPSTYSMKI QSLSQLKTLF SGTDGYKSRT FSSGKYNWRL VIYPNGNEKD NGTGFISMYV ELDSKSLSSN VLAYLTFFIF
101: NKKENKYFTI QDVEGKQFNA LRLVHGFPQV LPLDTFNDPK NGYVYDGDQC EFGVDVMVPL TNWEVVSFTQ KPTNKKFSWT LNKFSKLKEH CYVSSKFLIE
201: GRNWVLKLYP KGNNTTCSRW LSLFLHLADS ETKTMTTGEE IYTQCDMRIL DPFGSHHVTL KLNQWHKNTS GWGWSEFVSL AKLEEAYLDK QGYLKVEIEF
301: EVVSTITYSP
Best Arabidopsis Sequence Match ( AT1G69650.1 )
(BLAST)
001: MGASCSAPVS STIKKNWRDH PPSSYSLKIH NFSQLEKTTS FSGHKYQSRL FSSGDITGNV KDNGSGFISM YVELDSSSLM ESKPPTEVFA ELRFFVYNKK
101: QNKYFTKDVE IKRFDALKMV WGLPKGNECE FGVDVIVAPP LTNWEILSFH DEKLSYPKVT WSVKNFSQWK ENECSKPNRF SIGGREWVLK LFPKGNSRAK
201: GKYLSVFLYL ADNETLKPDE KIFTQVVVRI LNPLGSNHVA SRLNYWHKGS NFGYGWCKFL SLDKIRKTYL DKEDTLMIEA EFEVVSATKF STII
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9FWZ3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.