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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • plastid 3
  • mitochondrion 1
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY44083 Canola cytosol 74.68 73.02
CDY70350 Canola plastid 38.31 69.01
CDY28571 Canola cytosol 47.4 64.6
CDY04288 Canola cytosol 29.22 64.29
CDY28575 Canola golgi 63.31 63.93
CDY07338 Canola plastid 62.34 63.58
CDY70349 Canola cytosol 53.9 62.88
CDY04290 Canola extracellular 51.62 61.87
CDX81648 Canola plastid 51.62 55.59
CDY04283 Canola plastid 56.82 54.86
CDY07340 Canola plastid 56.49 54.55
CDX95908 Canola plastid 62.34 52.46
CDY44084 Canola cytosol 68.83 50.24
CDY57407 Canola cytosol 50.32 50.0
CDY39500 Canola cytosol 49.68 47.81
CDY19307 Canola cytosol 49.35 39.18
CDX83143 Canola cytosol 37.66 36.25
CDX99123 Canola cytosol 21.43 34.38
CDY36041 Canola plasma membrane 39.61 34.27
CDX82252 Canola plastid 39.29 33.7
CDX82246 Canola endoplasmic reticulum, extracellular 40.91 33.42
CDY43080 Canola endoplasmic reticulum, vacuole 40.91 33.07
CDY50083 Canola endoplasmic reticulum, vacuole 40.91 33.07
CDY43081 Canola extracellular, vacuole 39.61 31.94
CDY50084 Canola extracellular, vacuole 39.61 31.94
CDX82249 Canola plasma membrane, vacuole 39.29 31.59
CDX82251 Canola extracellular, golgi 39.29 30.33
CDX93727 Canola endoplasmic reticulum, extracellular, golgi 36.36 30.19
CDY50282 Canola endoplasmic reticulum, vacuole 37.01 29.61
CDY25415 Canola vacuole 38.64 29.46
CDY29822 Canola vacuole 38.31 29.28
CDY34004 Canola cytosol 28.25 29.0
KRH68153 Soybean cytosol 29.22 28.85
CDY37377 Canola cytosol, plastid 45.78 28.78
CDX82248 Canola endoplasmic reticulum, vacuole 40.26 28.18
CDY36040 Canola extracellular 33.77 27.51
CDX74582 Canola extracellular, golgi, plastid 33.12 27.27
CDX75913 Canola cytosol 27.27 27.18
CDX82371 Canola cytosol 26.95 26.86
CDY05531 Canola cytosol 24.68 25.42
CDY39666 Canola endoplasmic reticulum, vacuole 26.95 25.15
CDX86065 Canola cytosol 25.32 24.76
CDY05324 Canola cytosol 24.03 24.67
CDX87055 Canola golgi, plasma membrane 26.62 24.62
CDY19775 Canola extracellular 27.92 24.57
CDX87054 Canola extracellular 27.92 24.57
CDY67361 Canola vacuole 27.6 24.29
CDX88229 Canola extracellular 27.27 24.0
CDX80557 Canola extracellular 27.27 24.0
CDY67101 Canola endoplasmic reticulum, extracellular, vacuole 27.27 24.0
CDY19776 Canola extracellular, plasma membrane, vacuole 26.62 23.7
CDY05532 Canola extracellular 26.95 23.65
CDY24977 Canola extracellular 26.95 23.65
CDX87056 Canola extracellular 25.97 23.32
CDY19777 Canola extracellular 25.97 23.26
CDX81956 Canola extracellular 22.73 22.8
CDX89595 Canola endoplasmic reticulum, plasma membrane, vacuole 37.34 22.37
CDY70520 Canola vacuole 23.7 21.99
CDY46265 Canola plasma membrane 33.12 21.7
CDY29329 Canola plasma membrane 33.12 21.66
CDX79503 Canola cytosol 21.1 21.31
CDX84705 Canola cytosol 20.78 20.91
CDY07146 Canola cytosol 19.48 20.34
CDX91854 Canola cytosol 19.48 20.2
CDX91855 Canola extracellular, plasma membrane, vacuole 12.99 20.2
CDY07196 Canola cytosol 19.48 20.2
CDY48522 Canola cytosol 18.18 20.07
CDX74378 Canola cytosol 18.51 19.86
CDY51713 Canola cytosol 18.83 19.66
CDY23783 Canola cytosol 19.48 19.48
CDY12160 Canola cytosol 19.48 19.29
CDY60616 Canola cytosol, mitochondrion, plastid 17.53 18.75
CDY36039 Canola vacuole 39.61 13.25
Protein Annotations
EnsemblPlants:CDY58708EnsemblPlantsGene:GSBRNA2T00025031001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF213
PFAM:PF00917PFscan:PS50144ProteinID:CDY58708ProteinID:CDY58708.1SUPFAM:SSF49599UniParc:UPI0004EEBD60
UniProt:A0A078J0L3MapMan:35.2::::
Description
BnaCnng33640DBnaCnng33640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0L3]
Coordinates
chrLK033692:+:47694..49029
Molecular Weight (calculated)
35717.5 Da
IEP (calculated)
9.256
GRAVY (calculated)
-0.386
Length
308 amino acids
Sequence
(BLAST)
001: MGSVSAEIST TAKKWRNHPP SPYSLKFASS SDDKYQSRLF SSGGYNWYVS SIQLVLILMK LNKTDNGKGF ISMYVEIDSK SLISAPQREV FAELIFFVYN
101: KKENKYFTVQ DVEVKRFNAL QTVWGLRQVL PFDSFNNPEN GYVFEGDQCE FGVDVVVPSP VTNWEILSFN EKFSWNVKNF SQLKENRYTS NTFSMGARQW
201: VLWLYPKGDS RTDGKWLSLF LLLADCDKPK ADEKIFVQAY LRVLDPHGSN HKAYRKHEPL ARRRKPWFWL GEVLSLADLR KLYLDKEDAL NVEVEFNVIS
301: ATKYSPII
Best Arabidopsis Sequence Match ( AT2G15710.1 )
(BLAST)
001: MMCHGRKVKM RDNEMSQIRQ SLIPTGTEVS AGDGERRRCK TPEGQREKVV SDNDFVEEDC VLSKGGELLF GFDITQLLGQ QNWQGDSTIV NNLREHPPSS
101: YSLKINKLSQ LTFDKYESHR FLSGGYNWRL VIYPKGNEKD KGSGFISMYV EFDNTKVSST SPMEVFAYII FFVYNKKENK YFTIQDVEVK RFNALRTVWG
201: LSQVLSLETF NDLENGYTFE GEQCEFGVDV MVASPITKWE VVSFDEKLDI LKFSWSVKDF SVLKEEFYVS ERFSMGGRLW DLQMYPKGDP RRDKKWLSIF
301: LRLSGSETLT VDEKIYVIAH LRVLDPLGNW FRDRNKGWGY LEFLSFSKLR KSYLDLEDTF FPLNL
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQE3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.