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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX84705 Canola cytosol 95.08 94.77
CDY12160 Canola cytosol 53.11 52.09
CDY23783 Canola cytosol 52.46 51.95
CDY60616 Canola cytosol, mitochondrion, plastid 45.9 48.61
CDX91855 Canola extracellular, plasma membrane, vacuole 21.31 32.83
CDX91854 Canola cytosol 31.15 31.99
CDX74378 Canola cytosol 29.84 31.71
CDY07146 Canola cytosol 29.18 30.17
CDY07196 Canola cytosol 29.18 29.97
CDY51713 Canola cytosol 28.85 29.83
CDY48522 Canola cytosol 26.56 29.03
CDX99123 Canola cytosol 17.7 28.12
CDY28571 Canola cytosol 20.0 26.99
CDY05531 Canola cytosol 23.93 24.41
CDY05324 Canola cytosol 23.61 24.0
KRH68153 Soybean cytosol 23.93 23.4
CDX82371 Canola cytosol 23.28 22.98
CDX75913 Canola cytosol 23.28 22.98
CDY70520 Canola vacuole 24.59 22.59
CDY44083 Canola cytosol 22.95 22.22
CDY07338 Canola plastid 21.97 22.19
CDY70349 Canola cytosol 19.02 21.97
CDY67101 Canola endoplasmic reticulum, extracellular, vacuole 24.92 21.71
CDX87055 Canola golgi, plasma membrane 23.61 21.62
CDX87056 Canola extracellular 24.26 21.57
CDY04290 Canola extracellular 18.03 21.4
CDY28575 Canola golgi 21.31 21.31
CDY19777 Canola extracellular 23.93 21.22
CDX80557 Canola extracellular 24.26 21.14
CDY58708 Canola cytosol, nucleus, plastid 21.31 21.1
CDY24977 Canola extracellular 24.26 21.08
CDY05532 Canola extracellular 24.26 21.08
CDY67361 Canola vacuole 23.93 20.86
CDX74582 Canola extracellular, golgi, plastid 25.57 20.86
CDX83143 Canola cytosol 21.64 20.62
CDY19775 Canola extracellular 23.61 20.57
CDX87054 Canola extracellular 23.61 20.57
CDX88229 Canola extracellular 23.61 20.57
CDX81956 Canola extracellular 20.66 20.52
CDY19776 Canola extracellular, plasma membrane, vacuole 23.28 20.52
CDY07340 Canola plastid 21.31 20.38
CDX81648 Canola plastid 18.69 19.93
CDX93727 Canola endoplasmic reticulum, extracellular, golgi 23.93 19.68
CDX95908 Canola plastid 23.61 19.67
CDX82246 Canola endoplasmic reticulum, extracellular 24.26 19.63
CDY04283 Canola plastid 20.33 19.44
CDX82252 Canola plastid 22.62 19.22
CDY34004 Canola cytosol 18.69 19.0
CDY36041 Canola plasma membrane 21.97 18.82
CDY50084 Canola extracellular, vacuole 23.28 18.59
CDX82249 Canola plasma membrane, vacuole 23.28 18.54
CDY50083 Canola endoplasmic reticulum, vacuole 22.95 18.37
CDY43080 Canola endoplasmic reticulum, vacuole 22.95 18.37
CDX86065 Canola cytosol 18.69 18.1
CDY57407 Canola cytosol 18.36 18.06
CDY43081 Canola extracellular, vacuole 22.62 18.06
CDX82251 Canola extracellular, golgi 22.95 17.54
CDY39666 Canola endoplasmic reticulum, vacuole 18.36 16.97
CDY50282 Canola endoplasmic reticulum, vacuole 21.31 16.88
CDY39500 Canola cytosol 17.7 16.88
CDY36040 Canola extracellular 20.33 16.4
CDY46265 Canola plasma membrane 25.25 16.38
CDY29822 Canola vacuole 21.64 16.38
CDY25415 Canola vacuole 21.64 16.34
CDY29329 Canola plasma membrane 24.92 16.14
CDY44084 Canola cytosol 22.3 16.11
CDX82248 Canola endoplasmic reticulum, vacuole 22.3 15.45
CDY70350 Canola plastid 8.52 15.2
CDY19307 Canola cytosol 17.7 13.92
CDY04288 Canola cytosol 5.9 12.86
CDX89595 Canola endoplasmic reticulum, plasma membrane, vacuole 20.98 12.45
CDY37377 Canola cytosol, plastid 18.03 11.22
CDY36039 Canola vacuole 22.62 7.49
Protein Annotations
EnsemblPlants:CDX79503EnsemblPlantsGene:GSBRNA2T00132252001Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF213
PFAM:PF00917PFscan:PS50144ProteinID:CDX79503ProteinID:CDX79503.1SMART:SM00061SUPFAM:SSF49599
UniParc:UPI0004EDCE47MapMan:35.2::::
Description
BnaC03g18390D
Coordinates
chrLK031818:+:424380..426834
Molecular Weight (calculated)
34804.6 Da
IEP (calculated)
8.214
GRAVY (calculated)
-0.247
Length
305 amino acids
Sequence
(BLAST)
001: MGQTLSLEDT IRAEAKSHNN VHLMLVDGMS KLMTRQVENC VSSDFYVGGL KWNIVILQQQ DCLYFVLAIT DSKCIGSNWK VNCNVTLTIY SATSSFLNHN
101: RWTWFCFDAN NTTLLVSIPV KNMQDFTVND KSVFSAEITN VIPQSLDVGW TPRTMGTAES IKLMEVERNK SKFTWKITHF STFVGEHHSS YQFTVGPRKW
201: YLRMYPKGTS EGKGNSLSLY LHASDYVTGP NTKTLAVFKL RVLDQLKRNH HEIGQQFWFG TDGQKGEPKF LALEELHKAS NGYLVNDQIY IGVEFFYISA
301: TQNMI
Best Arabidopsis Sequence Match ( AT2G32870.1 )
(BLAST)
001: MNNSFRNKIH EQSKENLSDD RHKKSDRTLI VFNRKTPLYF YFFEQVRYIT GSIYILIETP SSRNLPIYSN ICIPISSHPN TNYRPKKRKK NPPTVYLTTI
101: ILIMGLLSLE DTIKEKLKDR KNAHFMLVDG MSKLLTEKVK NCQSLDFQVS GVKWRLVIRL SRGRKDHLSF VLEITDEKCT GSTWDVKFNF KIGIVPQTGP
201: DYCFVLVGHQ NEKKRSQGLA NFISHTDLKE RFLVNDKAGF YAEISDVQPN FPVTRIPRTM GTAERFKLIE FSPKNSRFTW KITQFSSFDG EEHSSYEFTV
301: GPRRWKLVMY PKGNGDGKGN SLSLYLFASD YVTNGPKGGT LAIYKLRVLD QLNRNHCETE CRYWFPYNPV NQMDSLWGRP KFLPLEELHK SSRGFLVNDQ
401: IYIGVEISIV STTEYL
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4IUR7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.