CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023852.1-P	Field mustard	cytosol	99.69	99.69
CDY19307	Canola	cytosol	94.38	77.84
CDY70350	Canola	plastid	30.0	56.14
CDY70349	Canola	cytosol	46.25	56.06
CDY04288	Canola	cytosol	23.75	54.29
CDY44083	Canola	cytosol	53.12	53.97
CDY07338	Canola	plastid	47.19	50.0
CDY58708	Canola	cytosol, nucleus, plastid	47.81	49.68
CDY04290	Canola	extracellular	39.69	49.42
CDY57407	Canola	cytosol	47.81	49.35
CDY28571	Canola	cytosol	34.06	48.23
CDY28575	Canola	golgi	45.94	48.2
CDX95908	Canola	plastid	50.94	44.54
CDX81648	Canola	plastid	39.38	44.06
AT1G65370.1	Thale cress	cytosol	30.94	43.61
CDY04283	Canola	plastid	43.44	43.57
CDY07340	Canola	plastid	42.5	42.63
AT2G15710.1	Thale cress	cytosol	47.19	41.37
AT1G65150.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	36.88	39.86
CDY44084	Canola	cytosol	49.69	37.68
AT1G65050.1	Thale cress	cytosol, mitochondrion	19.06	37.65
CDX83143	Canola	cytosol	35.31	35.31
CDY43080	Canola	endoplasmic reticulum, vacuole	40.31	33.86
CDY50083	Canola	endoplasmic reticulum, vacuole	40.0	33.6
CDY36041	Canola	plasma membrane	35.62	32.02
CDX82252	Canola	plastid	35.62	31.75
CDX82246	Canola	endoplasmic reticulum, extracellular	36.88	31.3
CDX82249	Canola	plasma membrane, vacuole	36.56	30.55
CDY43081	Canola	extracellular, vacuole	35.62	29.84
CDX82251	Canola	extracellular, golgi	36.25	29.07
CDY50084	Canola	extracellular, vacuole	34.69	29.06
CDY34004	Canola	cytosol	26.56	28.33
CDY50282	Canola	endoplasmic reticulum, vacuole	34.06	28.31
CDY25415	Canola	vacuole	35.62	28.22
CDY29822	Canola	vacuole	35.0	27.79
CDY37377	Canola	cytosol, plastid	42.5	27.76
CDX99123	Canola	cytosol	16.56	27.6
CDX74582	Canola	extracellular, golgi, plastid	31.56	27.01
KRH68153	Soybean	cytosol	26.25	26.92
CDY36040	Canola	extracellular	31.56	26.72
CDX82248	Canola	endoplasmic reticulum, vacuole	36.56	26.59
CDX75913	Canola	cytosol	25.31	26.21
CDX82371	Canola	cytosol	24.69	25.57
CDY05531	Canola	cytosol	23.75	25.42
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	29.38	25.34
CDY05324	Canola	cytosol	23.44	25.0
CDX88229	Canola	extracellular	27.19	24.86
CDY67361	Canola	vacuole	27.19	24.86
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	26.88	24.57
CDX87056	Canola	extracellular	26.25	24.49
CDY19777	Canola	extracellular	26.25	24.42
CDX80557	Canola	extracellular	26.25	24.0
CDX87054	Canola	extracellular	25.62	23.43
CDY19775	Canola	extracellular	25.62	23.43
CDX87055	Canola	golgi, plasma membrane	24.38	23.42
CDY24977	Canola	extracellular	25.62	23.36
CDX81956	Canola	extracellular	22.19	23.13
CDY05532	Canola	extracellular	25.31	23.08
CDY39666	Canola	endoplasmic reticulum, vacuole	23.75	23.03
CDY70520	Canola	vacuole	23.12	22.29
CDY19776	Canola	extracellular, plasma membrane, vacuole	24.06	22.25
CDX74378	Canola	cytosol	19.38	21.6
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	34.69	21.6
CDX91854	Canola	cytosol	20.0	21.55
CDY46265	Canola	plasma membrane	31.56	21.49
CDY29329	Canola	plasma membrane	31.25	21.23
CDY07146	Canola	cytosol	19.06	20.68
CDY51713	Canola	cytosol	18.75	20.34
CDX91855	Canola	extracellular, plasma membrane, vacuole	12.5	20.2
CDX86065	Canola	cytosol	19.38	19.68
CDY07196	Canola	cytosol	17.19	18.52
CDX79503	Canola	cytosol	16.88	17.7
CDY48522	Canola	cytosol	15.31	17.56
CDX84705	Canola	cytosol	15.94	16.67
CDY23783	Canola	cytosol	15.62	16.23
CDY12160	Canola	cytosol	15.31	15.76
CDY60616	Canola	cytosol, mitochondrion, plastid	13.12	14.58
CDY36039	Canola	vacuole	36.88	12.81

Protein Annotations

EnsemblPlants:CDY39500	EnsemblPlantsGene:GSBRNA2T00068011001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213
PFAM:PF00917	PFscan:PS50144	ProteinID:CDY39500	ProteinID:CDY39500.1	SUPFAM:SSF49599	UniParc:UPI0004EE08B7
UniProt:A0A078HM20	MapMan:35.2	:	:	:	:

Description

BnaA01g24880DBnaA01g24880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HM20]

Coordinates

chrLK032449:-:206517..207995

Molecular Weight (calculated)

37205.8 Da

IEP (calculated)

4.865

GRAVY (calculated)

-0.278

Length

320 amino acids

Sequence
(BLAST)

001: MVVTVSDEET SSLCFFASES TTSQTFWTER PPGSYSLKIQ NLAQLIGEKY HTRGFLVNGY NWRLIIYPKG NEKDNGSGYI SMYVEIDSTS EVFAYLTFFV
101: YNKKVNKYLC IHDTQVKRFN ALKKVWGSSQ MLPLELFNDP KNGYIFEEDQ CEFGVDVTID STVTNWEIVS FNENFCYPKF FFSVKNFTML NEHLYFMSNT
201: FSVGGNTWVL RFIRKCFSTL DDKWISIFLH LADNERLLPD ERIYTRGHFR VLDPYGSNHI TEKFNCWHDQ SNSGCGHDKV VSMDKLQEVY LDEEDTLSVA
301: IEFEVISATN YSPINYSAII

Best Arabidopsis Sequence Match ( AT1G69650.1 )
(BLAST)

001: MGASCSAPVS STIKKNWRDH PPSSYSLKIH NFSQLEKTTS FSGHKYQSRL FSSGDITGNV KDNGSGFISM YVELDSSSLM ESKPPTEVFA ELRFFVYNKK
101: QNKYFTKDVE IKRFDALKMV WGLPKGNECE FGVDVIVAPP LTNWEILSFH DEKLSYPKVT WSVKNFSQWK ENECSKPNRF SIGGREWVLK LFPKGNSRAK
201: GKYLSVFLYL ADNETLKPDE KIFTQVVVRI LNPLGSNHVA SRLNYWHKGS NFGYGWCKFL SLDKIRKTYL DKEDTLMIEA EFEVVSATKF STII

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9FWZ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.