CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70350	Canola	plastid	48.95	81.87
CDY70349	Canola	cytosol	54.9	59.47
CDY04288	Canola	cytosol	29.02	59.29
CDY07338	Canola	plastid	60.84	57.62
CDY04290	Canola	extracellular	51.75	57.59
CDY44083	Canola	cytosol	59.09	53.65
Bra004405.1-P	Field mustard	plastid	67.48	52.73
CDX95908	Canola	plastid	67.48	52.73
CDY58708	Canola	cytosol, nucleus, plastid	55.59	51.62
CDY04283	Canola	plastid	55.59	49.84
CDY07340	Canola	plastid	55.59	49.84
CDY28571	Canola	cytosol	38.81	49.12
CDY28575	Canola	golgi	50.35	47.21
CDY57407	Canola	cytosol	46.85	43.23
CDY44084	Canola	cytosol	59.79	40.52
CDY39500	Canola	cytosol	44.06	39.38
CDY19307	Canola	cytosol	43.71	32.22
CDY36041	Canola	plasma membrane	36.36	29.21
CDX99123	Canola	cytosol	19.58	29.17
CDX82252	Canola	plastid	35.31	28.13
CDX83143	Canola	cytosol	31.47	28.12
CDX82246	Canola	endoplasmic reticulum, extracellular	36.71	27.85
CDY43080	Canola	endoplasmic reticulum, vacuole	36.71	27.56
CDY50083	Canola	endoplasmic reticulum, vacuole	36.36	27.3
CDY43081	Canola	extracellular, vacuole	36.01	26.96
CDY50084	Canola	extracellular, vacuole	35.66	26.7
CDX82249	Canola	plasma membrane, vacuole	35.31	26.37
CDX82251	Canola	extracellular, golgi	36.71	26.32
CDY50282	Canola	endoplasmic reticulum, vacuole	35.31	26.23
CDY36040	Canola	extracellular	33.57	25.4
CDY25415	Canola	vacuole	35.31	25.0
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	32.17	24.8
CDY37377	Canola	cytosol, plastid	42.31	24.69
CDY29822	Canola	vacuole	34.62	24.57
KRH68153	Soybean	cytosol	26.57	24.36
CDX82248	Canola	endoplasmic reticulum, vacuole	36.71	23.86
CDX74582	Canola	extracellular, golgi, plastid	30.77	23.53
CDX75913	Canola	cytosol	24.83	22.98
CDY05531	Canola	cytosol	23.78	22.74
CDX82371	Canola	cytosol	24.48	22.65
CDX74378	Canola	cytosol	22.38	22.3
CDY05324	Canola	cytosol	22.73	21.67
CDX87055	Canola	golgi, plasma membrane	25.17	21.62
CDX91854	Canola	cytosol	22.38	21.55
CDY19776	Canola	extracellular, plasma membrane, vacuole	25.87	21.39
CDY34004	Canola	cytosol	22.38	21.33
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	25.87	21.14
CDY24977	Canola	extracellular	25.87	21.08
CDY67361	Canola	vacuole	25.52	20.86
CDY05532	Canola	extracellular	25.52	20.8
CDX80557	Canola	extracellular	25.17	20.57
CDY07146	Canola	cytosol	20.98	20.34
CDX88229	Canola	extracellular	24.83	20.29
CDX87056	Canola	extracellular	24.13	20.12
CDY19777	Canola	extracellular	24.13	20.06
CDX87054	Canola	extracellular	24.48	20.0
CDY19775	Canola	extracellular	24.13	19.71
CDY51713	Canola	cytosol	20.28	19.66
CDY70520	Canola	vacuole	22.03	18.98
CDX81956	Canola	extracellular	20.28	18.89
CDX79503	Canola	cytosol	19.93	18.69
CDY07196	Canola	cytosol	19.23	18.52
CDX84705	Canola	cytosol	19.58	18.3
CDY39666	Canola	endoplasmic reticulum, vacuole	20.98	18.18
CDX86065	Canola	cytosol	19.93	18.1
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	32.17	17.9
CDY48522	Canola	cytosol	17.13	17.56
CDY46265	Canola	plasma membrane	28.67	17.45
CDY29329	Canola	plasma membrane	28.32	17.2
CDX91855	Canola	extracellular, plasma membrane, vacuole	11.54	16.67
CDY23783	Canola	cytosol	17.83	16.56
CDY12160	Canola	cytosol	15.38	14.15
CDY60616	Canola	cytosol, mitochondrion, plastid	13.29	13.19
CDY36039	Canola	vacuole	35.66	11.07

Protein Annotations

EnsemblPlants:CDX81648	EnsemblPlantsGene:GSBRNA2T00136561001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213
PFAM:PF00917	PFscan:PS50144	ProteinID:CDX81648	ProteinID:CDX81648.1	SUPFAM:SSF49599	UniParc:UPI0004EDAECF
MapMan:35.2	:	:	:	:	:

Description

BnaC08g39530D

Coordinates

chrLK031826:-:161780..163269

Molecular Weight (calculated)

33051.4 Da

IEP (calculated)

9.369

GRAVY (calculated)

-0.540

Length

286 amino acids

Sequence
(BLAST)

001: MGSRSAVSTI NSTAFSDHKF QSRKFSSGGY KWRLIVYPKG NQKDNGSGFI SMYVEIDSKS LMVFTPPTEI FAELHFFVYN KKENKYFTIQ DVEVKRFNAL
101: RTVWGLVQVL PYDTFNNPEN GYVFEGGQCE FGVDVIQPPT ICSHLQRRVT EKERPQREKL QKTLKRRRPR LCAKDSFKSS IADGLRLYPK GDSRADGKWL
201: SVYLELTASD TLKEDEKIFV QANLRVLDPL GSNHIEHKMN VWCEVQKPSW GWYNFMSLAE LQKAYLDNKE HALNLEMEFK VVSATS

Best Arabidopsis Sequence Match ( AT1G69650.1 )
(BLAST)

001: MGASCSAPVS STIKKNWRDH PPSSYSLKIH NFSQLEKTTS FSGHKYQSRL FSSGDITGNV KDNGSGFISM YVELDSSSLM ESKPPTEVFA ELRFFVYNKK
101: QNKYFTKDVE IKRFDALKMV WGLPKGNECE FGVDVIVAPP LTNWEILSFH DEKLSYPKVT WSVKNFSQWK ENECSKPNRF SIGGREWVLK LFPKGNSRAK
201: GKYLSVFLYL ADNETLKPDE KIFTQVVVRI LNPLGSNHVA SRLNYWHKGS NFGYGWCKFL SLDKIRKTYL DKEDTLMIEA EFEVVSATKF STII

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9FWZ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.