CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007873.1-P	Field mustard	cytosol	100.0	100.0
CDY28575	Canola	golgi	80.63	83.28
CDY58708	Canola	cytosol, nucleus, plastid	73.02	74.68
CDY70350	Canola	plastid	38.73	71.34
CDY28571	Canola	cytosol	49.84	69.47
CDY70349	Canola	cytosol	57.78	68.94
CDY07338	Canola	plastid	63.81	66.56
CDY04290	Canola	extracellular	54.29	66.54
CDY04288	Canola	cytosol	28.89	65.0
CDY04283	Canola	plastid	61.27	60.5
CDY07340	Canola	plastid	61.27	60.5
CDX95908	Canola	plastid	68.89	59.29
CDX81648	Canola	plastid	53.65	59.09
CDY57407	Canola	cytosol	55.87	56.77
CDY44084	Canola	cytosol	74.92	55.92
CDY39500	Canola	cytosol	53.97	53.12
CDY19307	Canola	cytosol	54.6	44.33
CDX83143	Canola	cytosol	40.0	39.38
CDX82246	Canola	endoplasmic reticulum, extracellular	43.81	36.6
CDY50083	Canola	endoplasmic reticulum, vacuole	43.81	36.22
CDY43080	Canola	endoplasmic reticulum, vacuole	43.81	36.22
CDY36041	Canola	plasma membrane	40.32	35.67
CDY43081	Canola	extracellular, vacuole	43.17	35.6
CDX99123	Canola	cytosol	21.59	35.42
CDY50084	Canola	extracellular, vacuole	42.86	35.34
CDX82252	Canola	plastid	40.0	35.1
CDX82249	Canola	plasma membrane, vacuole	42.22	34.73
CDY29822	Canola	vacuole	41.9	32.75
CDY25415	Canola	vacuole	41.9	32.67
CDX82251	Canola	extracellular, golgi	40.95	32.33
CDY34004	Canola	cytosol	30.48	32.0
CDX82248	Canola	endoplasmic reticulum, vacuole	44.13	31.59
CDX93727	Canola	endoplasmic reticulum, extracellular, golgi	37.14	31.54
CDY50282	Canola	endoplasmic reticulum, vacuole	38.41	31.43
KRH68153	Soybean	cytosol	31.11	31.41
CDY37377	Canola	cytosol, plastid	48.57	31.22
CDX82371	Canola	cytosol	29.21	29.77
CDX75913	Canola	cytosol	29.21	29.77
CDX74582	Canola	extracellular, golgi, plastid	34.6	29.14
CDY05531	Canola	cytosol	27.62	29.1
CDY36040	Canola	extracellular	33.97	28.31
CDY05324	Canola	cytosol	26.67	28.0
CDX87055	Canola	golgi, plasma membrane	29.21	27.63
CDX88229	Canola	extracellular	29.84	26.86
CDY67361	Canola	vacuole	29.84	26.86
CDX87054	Canola	extracellular	29.84	26.86
CDX87056	Canola	extracellular	29.21	26.82
CDY19777	Canola	extracellular	29.21	26.74
CDX86065	Canola	cytosol	26.67	26.67
CDX91854	Canola	cytosol	25.08	26.6
CDY19775	Canola	extracellular	29.52	26.57
CDY67101	Canola	endoplasmic reticulum, extracellular, vacuole	29.52	26.57
CDY39666	Canola	endoplasmic reticulum, vacuole	27.62	26.36
CDY19776	Canola	extracellular, plasma membrane, vacuole	28.89	26.3
CDY24977	Canola	extracellular	29.21	26.21
CDX74378	Canola	cytosol	23.81	26.13
CDY07146	Canola	cytosol	24.44	26.1
CDX80557	Canola	extracellular	28.89	26.0
CDY05532	Canola	extracellular	28.89	25.93
CDY51713	Canola	cytosol	24.13	25.76
CDY07196	Canola	cytosol	24.13	25.59
CDX81956	Canola	extracellular	24.44	25.08
CDY48522	Canola	cytosol	21.9	24.73
CDY70520	Canola	vacuole	25.71	24.4
CDY46265	Canola	plasma membrane	35.56	23.83
CDY29329	Canola	plasma membrane	35.56	23.78
CDX91855	Canola	extracellular, plasma membrane, vacuole	14.92	23.74
CDX79503	Canola	cytosol	22.22	22.95
CDX89595	Canola	endoplasmic reticulum, plasma membrane, vacuole	36.83	22.57
CDX84705	Canola	cytosol	21.9	22.55
CDY12160	Canola	cytosol	21.27	21.54
CDY60616	Canola	cytosol, mitochondrion, plastid	18.73	20.49
CDY23783	Canola	cytosol	19.68	20.13
CDY36039	Canola	vacuole	42.54	14.55

Protein Annotations

EnsemblPlants:CDY44083	EnsemblPlantsGene:GSBRNA2T00079507001	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379	PANTHER:PTHR26379:SF213
PFAM:PF00917	PFscan:PS50144	ProteinID:CDY44083	ProteinID:CDY44083.1	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI0002546870	UniProt:A0A078I4N1	MapMan:35.2	:	:	:

Description

BnaA02g14470DBnaA02g14470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4N1]

Coordinates

chrLK032578:-:161026..162333

Molecular Weight (calculated)

36669.3 Da

IEP (calculated)

7.581

GRAVY (calculated)

-0.593

Length

315 amino acids

Sequence
(BLAST)

001: MSTGSGVVST IVKKWREHPP SSYCLKVDNF KQLEKFTTSS DDKYQSRLFS AGGYNWKLIV YPKGNKKDNG KGFISMYVEI DSKSLKSEQQ CEVFAELIFF
101: VYNKKENKYF TVQDVEVKRF NALKTVWGLR QVLPFDSFNN PVNGYVFEED QCEFGVDVVV PSPLTNWEIL SFNEKLQKPK FSWTVKKFSQ LKEHEYTSKK
201: FSVGERNWVL KLYPKGNSRE DDKWLSVFLH SADSDAPKAD EKIFVQAKLR VLDPHGSNHK AYQMDTWHIE KNMGWGWDEF LSLDELRKAY LDKEDALNVE
301: AEFEVVSATK YSPII

Best Arabidopsis Sequence Match ( AT3G22080.1 )
(BLAST)

001: MMCSSVSSTT LRSWRERTPN SYSLKLQNIS QVEKSTLFSD GKYQSRLFSS GGYNWRMIIY PKGNRKDDGS GFISMYVEID STSLLTTPTT EVFADLRFFV
101: FNKKENKYYT IQHVESKLFN AFRTIWGLAQ VLPVDTFTDP KNGYIFEGDQ CEFGVDVIVA APPTNWEIHT LHEALSQPKF FWTVKNFSEL NNNVYTSGNF
201: SMRERKWVLK LYPKGDVKGD RKWLSLYLYL DQSETLKESE KIFVQAQLRV LDPRGSNHVT HKISSWYTSS NTAWGYRKFV SLAEIPKAYL DKDTLKVQID
301: VEVVSEAEFS PSMI

Arabidopsis Description

Ubiquitin carboxyl-terminal hydrolase-like protein [Source:UniProtKB/TrEMBL;Acc:F4IYY5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.