Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48522 | Canola | cytosol | 85.19 | 90.68 |
| CDY51713 | Canola | cytosol | 58.25 | 58.64 |
| CDY07146 | Canola | cytosol | 57.24 | 57.63 |
| CDX91855 | Canola | extracellular, plasma membrane, vacuole | 34.34 | 51.52 |
| CDX91854 | Canola | cytosol | 51.52 | 51.52 |
| CDX74378 | Canola | cytosol | 48.48 | 50.17 |
| CDY12160 | Canola | cytosol | 31.99 | 30.55 |
| CDY23783 | Canola | cytosol | 31.65 | 30.52 |
| CDY60616 | Canola | cytosol, mitochondrion, plastid | 28.96 | 29.86 |
| CDX79503 | Canola | cytosol | 29.97 | 29.18 |
| CDX84705 | Canola | cytosol | 29.29 | 28.43 |
| CDX99123 | Canola | cytosol | 17.85 | 27.6 |
| CDY28571 | Canola | cytosol | 20.54 | 26.99 |
| CDX82371 | Canola | cytosol | 25.93 | 24.92 |
| CDX75913 | Canola | cytosol | 25.59 | 24.6 |
| CDY44083 | Canola | cytosol | 25.59 | 24.13 |
| CDY28575 | Canola | golgi | 24.58 | 23.93 |
| CDY70349 | Canola | cytosol | 19.87 | 22.35 |
| CDY05531 | Canola | cytosol | 21.89 | 21.74 |
| CDY04290 | Canola | extracellular | 18.18 | 21.01 |
| CDY04283 | Canola | plastid | 22.56 | 21.0 |
| CDY07340 | Canola | plastid | 22.22 | 20.69 |
| CDY07338 | Canola | plastid | 20.88 | 20.53 |
| CDY05324 | Canola | cytosol | 20.54 | 20.33 |
| KRH68153 | Soybean | cytosol | 21.21 | 20.19 |
| CDY50084 | Canola | extracellular, vacuole | 25.93 | 20.16 |
| CDX87056 | Canola | extracellular | 22.9 | 19.83 |
| CDX87055 | Canola | golgi, plasma membrane | 22.22 | 19.82 |
| CDX93727 | Canola | endoplasmic reticulum, extracellular, golgi | 24.58 | 19.68 |
| CDY43081 | Canola | extracellular, vacuole | 25.25 | 19.63 |
| CDY70520 | Canola | vacuole | 21.89 | 19.58 |
| CDY58708 | Canola | cytosol, nucleus, plastid | 20.2 | 19.48 |
| CDY19777 | Canola | extracellular | 22.56 | 19.48 |
| CDX95908 | Canola | plastid | 23.91 | 19.4 |
| CDY04288 | Canola | cytosol | 9.09 | 19.29 |
| CDX81648 | Canola | plastid | 18.52 | 19.23 |
| CDY19776 | Canola | extracellular, plasma membrane, vacuole | 22.22 | 19.08 |
| CDX80557 | Canola | extracellular | 21.89 | 18.57 |
| CDY19775 | Canola | extracellular | 21.89 | 18.57 |
| CDY67101 | Canola | endoplasmic reticulum, extracellular, vacuole | 21.89 | 18.57 |
| CDX87054 | Canola | extracellular | 21.89 | 18.57 |
| CDY67361 | Canola | vacuole | 21.55 | 18.29 |
| CDX81956 | Canola | extracellular | 18.86 | 18.24 |
| CDY05532 | Canola | extracellular | 21.55 | 18.23 |
| CDY57407 | Canola | cytosol | 18.86 | 18.06 |
| CDX82251 | Canola | extracellular, golgi | 24.24 | 18.05 |
| CDX88229 | Canola | extracellular | 21.21 | 18.0 |
| CDY24977 | Canola | extracellular | 21.21 | 17.95 |
| CDY50083 | Canola | endoplasmic reticulum, vacuole | 22.9 | 17.85 |
| CDY43080 | Canola | endoplasmic reticulum, vacuole | 22.9 | 17.85 |
| CDX82252 | Canola | plastid | 21.55 | 17.83 |
| CDX86065 | Canola | cytosol | 18.86 | 17.78 |
| CDX82249 | Canola | plasma membrane, vacuole | 22.9 | 17.75 |
| CDY36040 | Canola | extracellular | 22.56 | 17.72 |
| CDY36041 | Canola | plasma membrane | 21.21 | 17.7 |
| CDY44084 | Canola | cytosol | 24.92 | 17.54 |
| CDX82246 | Canola | endoplasmic reticulum, extracellular | 22.22 | 17.51 |
| CDY39500 | Canola | cytosol | 18.52 | 17.19 |
| CDX83143 | Canola | cytosol | 18.52 | 17.19 |
| CDX74582 | Canola | extracellular, golgi, plastid | 21.55 | 17.11 |
| CDY25415 | Canola | vacuole | 23.23 | 17.08 |
| CDY50282 | Canola | endoplasmic reticulum, vacuole | 21.89 | 16.88 |
| CDY29822 | Canola | vacuole | 22.56 | 16.63 |
| CDY70350 | Canola | plastid | 9.43 | 16.37 |
| CDY39666 | Canola | endoplasmic reticulum, vacuole | 18.18 | 16.36 |
| CDX82248 | Canola | endoplasmic reticulum, vacuole | 22.56 | 15.23 |
| CDY34004 | Canola | cytosol | 14.48 | 14.33 |
| CDY46265 | Canola | plasma membrane | 22.56 | 14.26 |
| CDY29329 | Canola | plasma membrane | 22.22 | 14.01 |
| CDY19307 | Canola | cytosol | 17.17 | 13.14 |
| CDY37377 | Canola | cytosol, plastid | 19.19 | 11.63 |
| CDX89595 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 19.19 | 11.09 |
| CDY36039 | Canola | vacuole | 23.23 | 7.49 |
Protein Annotations
| EnsemblPlants:CDY07196 | EnsemblPlantsGene:GSBRNA2T00123555001 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 |
| PFAM:PF00917 | PFscan:PS50144 | ProteinID:CDY07196 | ProteinID:CDY07196.1 | SMART:SM00061 | SUPFAM:SSF49599 |
| UniParc:UPI0004EDB001 | MapMan:35.2 | : | : | : | : |
Description
BnaCnng02110D
Coordinates
chrLK031975:-:772724..774286
Molecular Weight (calculated)
34636.4 Da
IEP (calculated)
5.040
GRAVY (calculated)
-0.402
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRPIPIEMM VQEFKKNHTN SHLFKIDNFS LLTKYEIDCI ESSVFDLCGR KWKILLNYDE DEEHVSIFLE NQDPLDVELE YQVYVVSQLK AVWYPKVNVK
101: WDFSASSKPI AKGITNLMSL DDLKSKGFLI EDCCMFGASL PDQKTERPGT VECFSLIEKP LNNKVTWMMT KFSSFDPEKA HQSNEFIVGN RKWRIEVHPR
201: GYEEVKGESF SVYLVGERYI NNAPKTKTFA KSKLRVLDQV NRNHVEATDS YWVDEEYDDT NGFMEFMPLS KLCEPYLVKD KLYVGVEFEV ISVAKYV
101: WDFSASSKPI AKGITNLMSL DDLKSKGFLI EDCCMFGASL PDQKTERPGT VECFSLIEKP LNNKVTWMMT KFSSFDPEKA HQSNEFIVGN RKWRIEVHPR
201: GYEEVKGESF SVYLVGERYI NNAPKTKTFA KSKLRVLDQV NRNHVEATDS YWVDEEYDDT NGFMEFMPLS KLCEPYLVKD KLYVGVEFEV ISVAKYV
001: MSRPIPIEEM VRLFKIRHTT SHLFKIDNFS LLKKHGIEKV ESSVFDLAGH KWKLSVYPNG HKNAKGTHVS MFLVNQVPVN DMPTYELLVV SQLERKWHTH
101: GRDEFDINPE PASEGFLRFI SLADLERKGF LIGDCCMFGV KFHGIEPANP GTAECFSLIE KPLNHKVTWM MSKFSSFNPG KAHQSNEFVV GTRKWRLEVH
201: PRGYMDEKDK SFSVYLSAEG FVNNAPMTKT YAKFKLRVLD QVSWNHVEES GLSWFDAEPS DQSGFADFMP LGKLNEPYLV KDKLYVGVEF EVVSTTYYC
101: GRDEFDINPE PASEGFLRFI SLADLERKGF LIGDCCMFGV KFHGIEPANP GTAECFSLIE KPLNHKVTWM MSKFSSFNPG KAHQSNEFVV GTRKWRLEVH
201: PRGYMDEKDK SFSVYLSAEG FVNNAPMTKT YAKFKLRVLD QVSWNHVEES GLSWFDAEPS DQSGFADFMP LGKLNEPYLV KDKLYVGVEF EVVSTTYYC
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ38]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.