Factsheet for Bra000640.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83143	Canola	cytosol	100.0	100.0
CDY34004	Canola	cytosol	80.94	86.33
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	64.69	57.98
AT3G20370.1	Thale cress	extracellular, plasma membrane	65.0	54.88
Bra001785.1-P	Field mustard	nucleus	46.56	52.84
Bra040904.1-P	Field mustard	extracellular, vacuole	62.19	52.09
Bra040903.1-P	Field mustard	extracellular, vacuole	60.94	51.05
Bra035787.1-P	Field mustard	vacuole	59.69	47.28
Bra001786.1-P	Field mustard	extracellular, golgi	56.25	45.11
AT3G20380.1	Thale cress	extracellular, vacuole	49.69	42.4
Bra007873.1-P	Field mustard	cytosol	39.38	40.0
Bra031322.1-P	Field mustard	cytosol, plastid	37.81	39.03
Bra003989.1-P	Field mustard	plastid	33.12	36.55
Bra023852.1-P	Field mustard	cytosol	35.31	35.31
Bra004405.1-P	Field mustard	plastid	40.0	34.97
Bra003990.1-P	Field mustard	plastid	31.56	33.67
Bra003837.1-P	Field mustard	cytosol	34.38	32.64
Bra034175.1-P	Field mustard	cytosol, plastid	33.44	32.04
Bra009894.1-P	Field mustard	cytosol	24.69	30.98
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	35.62	29.84
Bra001660.1-P	Field mustard	cytosol	26.25	29.27
Bra003836.1-P	Field mustard	extracellular, golgi	20.62	29.07
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	19.38	28.84
KRH68153	Soybean	cytosol	27.5	28.21
Bra039646.1-P	Field mustard	plastid	38.75	27.99
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	29.69	27.14
Bra020540.1-P	Field mustard	cytosol	25.0	26.76
Bra036572.1-P	Field mustard	extracellular	28.44	26.45
Bra036573.1-P	Field mustard	extracellular	28.12	25.71
Bra007874.1-P	Field mustard	cytosol	31.56	25.25
Bra020541.1-P	Field mustard	extracellular	27.5	25.07
Bra001787.1-P	Field mustard	endoplasmic reticulum	64.69	22.26
Bra022923.1-P	Field mustard	cytosol	21.25	22.22
Bra005554.1-P	Field mustard	cytosol	19.69	20.45
Bra037411.1-P	Field mustard	mitochondrion	18.12	20.28
Bra037358.1-P	Field mustard	cytosol	16.88	18.75

Protein Annotations

EnsemblPlants:Bra000640.1	EnsemblPlants:Bra000640.1-P	EnsemblPlantsGene:Bra000640	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SEG:seg	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI000254020F	UniProt:M4C8W2	MapMan:35.2	:	:	:

Description

AT3G20370 (E=2e-113) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA03:-:12218919..12220378

Molecular Weight (calculated)

36730.0 Da

IEP (calculated)

8.518

GRAVY (calculated)

-0.426

Length

320 amino acids

Sequence
(BLAST)

001: MHYLQKHQEI SSRDYKLSSS NTLKGLRERP PSTYSLKMEA FHRVLNSTEY YETRPFSAGG YNWTLRVYPN GNNKDGGSGY LSLYVAIDKS SLDASAHQEV
101: YADLRFYIFN RNQRKYFTIQ DTDVFRFNAF NTMWGFSQVL PLDTFKDLKN GYLYDGDHSE FGVDVTVPKP FEKSELLSFS KRSDRFTWTI RGFSTLTRYT
201: YSDVISFAGR KWQLGINSSG SGSGSGKAVS LFFHLLANQR TGAYEAVYVL AKFQVLNQLK LGNIQMELEN WYGITSFGWG FSEFVSFDDL RDSSKGFLVD
301: DTLMVQVELE AISTTKYFPS

Best Arabidopsis Sequence Match ( AT3G20360.1 )
(BLAST)

001: MMSYHYINTL CIVISLLSCL FITSSFAGPV PNQENGSQKI FPTQISSRDS KVSLSSTVKG LRERPPSSYS LKMESFNTLM KSVYTERYES RPFRVGRYNW
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK

Arabidopsis Description

AT3g20360/MQC12_11 [Source:UniProtKB/TrEMBL;Acc:Q8W0Z1]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.