Factsheet for Bra020540.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05531	Canola	cytosol	100.0	100.0
Bra009894.1-P	Field mustard	cytosol	68.23	80.0
Bra020541.1-P	Field mustard	extracellular	85.95	73.22
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	82.27	70.29
Bra036573.1-P	Field mustard	extracellular	80.6	68.86
AT5G26320.1	Thale cress	vacuole	68.9	58.52
Bra036572.1-P	Field mustard	extracellular	64.21	55.81
KRH68153	Soybean	cytosol	29.1	27.88
Bra007873.1-P	Field mustard	cytosol	29.1	27.62
Bra001660.1-P	Field mustard	cytosol	26.42	27.53
Bra001785.1-P	Field mustard	nucleus	25.42	26.95
Bra003989.1-P	Field mustard	plastid	24.41	25.17
Bra000640.1-P	Field mustard	cytosol	26.76	25.0
Bra003837.1-P	Field mustard	cytosol	28.09	24.93
Bra040903.1-P	Field mustard	extracellular, vacuole	31.44	24.61
Bra005554.1-P	Field mustard	cytosol	25.08	24.35
Bra022923.1-P	Field mustard	cytosol	24.41	23.86
Bra040904.1-P	Field mustard	extracellular, vacuole	30.43	23.82
Bra004405.1-P	Field mustard	plastid	29.1	23.77
Bra023852.1-P	Field mustard	cytosol	25.42	23.75
Bra037411.1-P	Field mustard	mitochondrion	22.41	23.43
Bra031322.1-P	Field mustard	cytosol, plastid	24.08	23.23
Bra001786.1-P	Field mustard	extracellular, golgi	29.77	22.31
Bra037358.1-P	Field mustard	cytosol	21.4	22.22
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	26.42	22.13
Bra003990.1-P	Field mustard	plastid	21.74	21.67
Bra035787.1-P	Field mustard	vacuole	28.76	21.29
Bra003836.1-P	Field mustard	extracellular, golgi	15.72	20.7
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	26.42	20.68
Bra034175.1-P	Field mustard	cytosol, plastid	22.07	19.76
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	13.71	19.07
Bra007874.1-P	Field mustard	cytosol	24.08	18.0
Bra039646.1-P	Field mustard	plastid	23.41	15.8
Bra001787.1-P	Field mustard	endoplasmic reticulum	30.77	9.89

Protein Annotations

EnsemblPlants:Bra020540.1	EnsemblPlants:Bra020540.1-P	EnsemblPlantsGene:Bra020540	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF214	PFAM:PF00917	PFscan:PS50144	SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI0002546C95
UniProt:M4DVJ6	MapMan:35.2	:	:	:	:

Description

AT5G26280 (E=1e-132) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA02:+:24694061..24695981

Molecular Weight (calculated)

33895.3 Da

IEP (calculated)

5.783

GRAVY (calculated)

-0.186

Length

299 amino acids

Sequence
(BLAST)

001: MDTQETSLGV TRVLREERPS SKIVTIAGYS VIKGRGEPYE SSVFEAAGYK WRLVLHVGRA GYISLYVRIE ETETIPYGLE VNVDLKLLVH VPKLDKYLTV
101: TDGAVKRFNA EKKEWGFEQL IDLASFENTN EGYIVQDTCS FGAEIFIVKP AKVQEKVTFI SNPPRNVFTW EIPHFSDMED KFYYSDDFLV EDRYWRLGFN
201: PKGGSALPIY LYAQGFRPDA VATNTWGAVN LRLKNQRSTN HRQIYSAAWY PIRSGYGVGV NNIILLADLN DASKGYLVND AIIFEAEMVK VTVTNIVSV

Best Arabidopsis Sequence Match ( AT5G26280.1 )
(BLAST)

001: MNNQKWSIGF ISLAFLFITS SSAEFIIQQV TKGRGIEYNS SYSLEENLGV TRELREERPS SKIVTITSFS VIKGRGEPYE SSVFEAAGYK WRLVLYVNGN
101: KNDGGNDHIS LYARIEETNS LPLGWEVNVD LKLFVHNGKL HKYLTVTDGL VKRYNNAKKE WGFGQLIPRS TFYNANEGYL DQDTGSFGAE IFIVKPAQQQ
201: EKVTFISNPP NNVFTWKILR FSTLEDKFYY SDDFLVEDRY WRLGFNPKGD GGGRPHALPI FLFAQGHKAN AVATNTWGAV NLRLKNQRST NHRQIYSAAW
301: YPIGSGYGVG VNNIILLADL NDASKGYLVN DAIIFEAEMV KVSITNIVSA

Arabidopsis Description

TRAF-like family protein [Source:TAIR;Acc:AT5G26280]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.