Factsheet for Bra037358.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48522	Canola	cytosol	85.76	88.53
Bra037411.1-P	Field mustard	mitochondrion	56.6	56.99
Bra005554.1-P	Field mustard	cytosol	33.33	31.17
Bra022923.1-P	Field mustard	cytosol	29.51	27.78
Bra001660.1-P	Field mustard	cytosol	23.96	24.04
Bra007873.1-P	Field mustard	cytosol	25.0	22.86
Bra020540.1-P	Field mustard	cytosol	22.22	21.4
Bra001785.1-P	Field mustard	nucleus	20.14	20.57
Bra009894.1-P	Field mustard	cytosol	18.06	20.39
KRH68153	Soybean	cytosol	21.53	19.87
Bra003990.1-P	Field mustard	plastid	20.49	19.67
Bra004405.1-P	Field mustard	plastid	24.65	19.4
Bra036572.1-P	Field mustard	extracellular	22.92	19.19
Bra040903.1-P	Field mustard	extracellular, vacuole	25.35	19.11
Bra003989.1-P	Field mustard	plastid	18.75	18.62
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	22.57	18.57
Bra036573.1-P	Field mustard	extracellular	22.22	18.29
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	23.96	18.06
Bra020541.1-P	Field mustard	extracellular	21.88	17.95
Bra001786.1-P	Field mustard	extracellular, golgi	24.31	17.54
Bra003837.1-P	Field mustard	cytosol	20.49	17.51
Bra040904.1-P	Field mustard	extracellular, vacuole	22.92	17.28
Bra000640.1-P	Field mustard	cytosol	18.75	16.88
Bra031322.1-P	Field mustard	cytosol, plastid	18.06	16.77
Bra035787.1-P	Field mustard	vacuole	22.92	16.34
Bra023852.1-P	Field mustard	cytosol	18.06	16.25
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	20.14	16.25
Bra034175.1-P	Field mustard	cytosol, plastid	17.01	14.67
Bra007874.1-P	Field mustard	cytosol	19.79	14.25
Bra039646.1-P	Field mustard	plastid	21.88	14.22
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	7.64	10.23
Bra003836.1-P	Field mustard	extracellular, golgi	7.99	10.13
Bra001787.1-P	Field mustard	endoplasmic reticulum	22.22	6.88

Protein Annotations

EnsemblPlants:Bra037358.1	EnsemblPlants:Bra037358.1-P	EnsemblPlantsGene:Bra037358	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI0002541A49
UniProt:M4F8E6	MapMan:35.2	:	:	:	:

Description

AT4G00780 (E=6e-091) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA09:-:893798..895066

Molecular Weight (calculated)

33341.5 Da

IEP (calculated)

5.025

GRAVY (calculated)

-0.440

Length

288 amino acids

Sequence
(BLAST)

001: MVQEFKKNHT NSHLFKIDNF SLLTKYEIDC IESSVFDLCG RKWKILVNYD EDEEHVSIFF ENQDPLDVEL EYQVYVVSQL KAVWYPKANV KWDFSASSKP
101: IAKGITNLMS LDDLKSKGFL IEDCCMFGAS LPDQKTERPG TAECFSLIEK PLNNKVTWMM TKFSSFDAEK AHQSNEFIVG NRKWRIEVHP RGHEEAKGES
201: CSVYLVGEGY INNAPKTKTF AKSKLRALDQ VNRNHLEATD SYWVDEEYDD TNGFMEFMPL SKLCEPYLVK DKFYVGVEFE VISVAKYV

Best Arabidopsis Sequence Match ( AT4G00780.1 )
(BLAST)

001: MSRPIPIEEM VRLFKIRHTT SHLFKIDNFS LLKKHGIEKV ESSVFDLAGH KWKLSVYPNG HKNAKGTHVS MFLVNQVPVN DMPTYELLVV SQLERKWHTH
101: GRDEFDINPE PASEGFLRFI SLADLERKGF LIGDCCMFGV KFHGIEPANP GTAECFSLIE KPLNHKVTWM MSKFSSFNPG KAHQSNEFVV GTRKWRLEVH
201: PRGYMDEKDK SFSVYLSAEG FVNNAPMTKT YAKFKLRVLD QVSWNHVEES GLSWFDAEPS DQSGFADFMP LGKLNEPYLV KDKLYVGVEF EVVSTTYYC

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.