Factsheet for Bra022923.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
plastid 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84705	Canola	cytosol	100.0	100.0
Bra005554.1-P	Field mustard	cytosol	55.23	54.87
Bra037411.1-P	Field mustard	mitochondrion	27.78	29.72
Bra037358.1-P	Field mustard	cytosol	27.78	29.51
Bra020540.1-P	Field mustard	cytosol	23.86	24.41
Bra001785.1-P	Field mustard	nucleus	22.22	24.11
KRH68153	Soybean	cytosol	24.51	24.04
Bra009894.1-P	Field mustard	cytosol	19.93	23.92
Bra001660.1-P	Field mustard	cytosol	22.22	23.69
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	25.16	22.0
Bra007873.1-P	Field mustard	cytosol	22.55	21.9
Bra003989.1-P	Field mustard	plastid	20.26	21.38
Bra020541.1-P	Field mustard	extracellular	24.51	21.37
Bra000640.1-P	Field mustard	cytosol	22.22	21.25
Bra003990.1-P	Field mustard	plastid	20.59	21.0
Bra036573.1-P	Field mustard	extracellular	23.86	20.86
Bra036572.1-P	Field mustard	extracellular	23.2	20.64
Bra003837.1-P	Field mustard	cytosol	22.22	20.18
Bra004405.1-P	Field mustard	plastid	23.2	19.4
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	23.53	18.85
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	21.9	18.77
Bra040903.1-P	Field mustard	extracellular, vacuole	23.2	18.59
Bra040904.1-P	Field mustard	extracellular, vacuole	22.88	18.32
Bra031322.1-P	Field mustard	cytosol, plastid	17.97	17.74
Bra039646.1-P	Field mustard	plastid	24.84	17.16
Bra001786.1-P	Field mustard	extracellular, golgi	22.22	17.04
Bra035787.1-P	Field mustard	vacuole	22.22	16.83
Bra023852.1-P	Field mustard	cytosol	16.67	15.94
Bra034175.1-P	Field mustard	cytosol, plastid	16.99	15.57
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	9.15	13.02
Bra007874.1-P	Field mustard	cytosol	16.34	12.5
Bra003836.1-P	Field mustard	extracellular, golgi	8.82	11.89
Bra001787.1-P	Field mustard	endoplasmic reticulum	22.22	7.31

Protein Annotations

EnsemblPlants:Bra022923.1	EnsemblPlants:Bra022923.1-P	EnsemblPlantsGene:Bra022923	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI000253FCC5
UniProt:M4E2C3	MapMan:35.2	:	:	:	:

Description

AT2G32870 (E=2e-081) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA03:+:7787004..7788868

Molecular Weight (calculated)

35127.0 Da

IEP (calculated)

8.210

GRAVY (calculated)

-0.291

Length

306 amino acids

Sequence
(BLAST)

001: MGQTLSLEDT IRAEAKSHNN VHLMLVDGMS KLMTRQVENC VSSDFYVGGL KWNIVILQQQ DCLYYVLVIT DSKCIGSNWK VNCNVKLTIY SATSPFLNHN
101: RWTWFCFDAN NTTLLVSIPV KNMQELYTVN DKSVFSAEIT NVNPQSLDVG WNPRTMGTAE NIKLMEVERN KSKFTWKITH FSTFVSEHHS SYQFTVGPRK
201: WYLRMYPKGT LEGKGNSLSL YLHASDYVTG PNTKTLAVFK LRVLDQLKRN HHEIGQQFWF GSDGQKGEPK FLALEELHKA SNGFLVNDQI YIGVEFFYIS
301: TTENMI

Best Arabidopsis Sequence Match ( AT2G32870.1 )
(BLAST)

001: MNNSFRNKIH EQSKENLSDD RHKKSDRTLI VFNRKTPLYF YFFEQVRYIT GSIYILIETP SSRNLPIYSN ICIPISSHPN TNYRPKKRKK NPPTVYLTTI
101: ILIMGLLSLE DTIKEKLKDR KNAHFMLVDG MSKLLTEKVK NCQSLDFQVS GVKWRLVIRL SRGRKDHLSF VLEITDEKCT GSTWDVKFNF KIGIVPQTGP
201: DYCFVLVGHQ NEKKRSQGLA NFISHTDLKE RFLVNDKAGF YAEISDVQPN FPVTRIPRTM GTAERFKLIE FSPKNSRFTW KITQFSSFDG EEHSSYEFTV
301: GPRRWKLVMY PKGNGDGKGN SLSLYLFASD YVTNGPKGGT LAIYKLRVLD QLNRNHCETE CRYWFPYNPV NQMDSLWGRP KFLPLEELHK SSRGFLVNDQ
401: IYIGVEISIV STTEYL

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4IUR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.