Factsheet for Bra001785.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82252	Canola	plastid	100.0	78.55
AT3G20360.1	Thale cress	endoplasmic reticulum, extracellular	77.66	60.33
Bra000640.1-P	Field mustard	cytosol	52.84	46.56
Bra040904.1-P	Field mustard	extracellular, vacuole	59.22	43.72
Bra040903.1-P	Field mustard	extracellular, vacuole	57.09	42.15
Bra001786.1-P	Field mustard	extracellular, golgi	58.87	41.6
Bra035787.1-P	Field mustard	vacuole	57.8	40.35
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	48.58	38.38
Bra031322.1-P	Field mustard	cytosol, plastid	39.01	35.48
Bra007873.1-P	Field mustard	cytosol	39.36	35.24
Bra003989.1-P	Field mustard	plastid	33.33	32.41
Bra003990.1-P	Field mustard	plastid	34.4	32.33
Bra023852.1-P	Field mustard	cytosol	36.52	32.19
Bra004405.1-P	Field mustard	plastid	41.13	31.69
Bra009894.1-P	Field mustard	cytosol	28.01	30.98
Bra034175.1-P	Field mustard	cytosol, plastid	35.46	29.94
Bra001660.1-P	Field mustard	cytosol	27.66	27.18
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	32.62	26.29
Bra003837.1-P	Field mustard	cytosol	31.21	26.11
Bra036573.1-P	Field mustard	extracellular	31.91	25.71
Bra020540.1-P	Field mustard	cytosol	26.95	25.42
Bra007874.1-P	Field mustard	cytosol	35.82	25.25
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	34.04	25.13
Bra039646.1-P	Field mustard	plastid	39.36	25.06
KRH68153	Soybean	cytosol	27.3	24.68
Bra020541.1-P	Field mustard	extracellular	30.5	24.5
Bra037411.1-P	Field mustard	mitochondrion	24.82	24.48
Bra036572.1-P	Field mustard	extracellular	27.66	22.67
Bra022923.1-P	Field mustard	cytosol	24.11	22.22
Bra037358.1-P	Field mustard	cytosol	20.57	20.14
Bra005554.1-P	Field mustard	cytosol	21.28	19.48
Bra003836.1-P	Field mustard	extracellular, golgi	15.25	18.94
Bra001787.1-P	Field mustard	endoplasmic reticulum	60.64	18.39
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	13.48	17.67

Protein Annotations

EnsemblPlants:Bra001785.1	EnsemblPlants:Bra001785.1-P	EnsemblPlantsGene:Bra001785	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI00025405C4
UniProt:M4CC55	MapMan:35.2	:	:	:	:

Description

AT3G20360 (E=8e-133) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA03:-:18432151..18433649

Molecular Weight (calculated)

32705.9 Da

IEP (calculated)

9.367

GRAVY (calculated)

-0.371

Length

282 amino acids

Sequence
(BLAST)

001: MKSTYTERYD SRPFRVGKYN WTLVVYPKGN RNDSGTGYIS LYVAIDSSTL TSPRQVVPAD LRFYVFNKKE KKYFTIQDSD VWQFTINKTM WGFPRVLPLS
101: TFSNLKNGYL YDMDQCEFGV DITIPPIFEK SELFSVAKSF PNKRFTWFIQ GFSTLPSDYL SEEFIIGGIS WNLRVFRNGF GAHEGKNLSL YLNLGPQELL
201: KTKPYDKIYA RAMLRVPNQG QSNYIVQRPL DNWFSPQNIG WGYADFMPLS DLRDSSTGFV RNDMLVVQVE MEAISTTKYF PS

Best Arabidopsis Sequence Match ( AT3G20360.1 )
(BLAST)

001: MMSYHYINTL CIVISLLSCL FITSSFAGPV PNQENGSQKI FPTQISSRDS KVSLSSTVKG LRERPPSSYS LKMESFNTLM KSVYTERYES RPFRVGRYNW
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK

Arabidopsis Description

AT3g20360/MQC12_11 [Source:UniProtKB/TrEMBL;Acc:Q8W0Z1]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.