Factsheet for Bra003839.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003836.1-P	Field mustard	extracellular, golgi	70.23	66.52
Bra003837.1-P	Field mustard	cytosol	61.4	39.17
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	63.26	35.6
AT1G58270.1	Thale cress	golgi, plasma membrane, vacuole	63.72	34.6
Bra000640.1-P	Field mustard	cytosol	28.84	19.38
Bra040903.1-P	Field mustard	extracellular, vacuole	31.63	17.8
Bra040904.1-P	Field mustard	extracellular, vacuole	31.16	17.54
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	28.84	17.37
Bra035787.1-P	Field mustard	vacuole	32.09	17.08
Bra001786.1-P	Field mustard	extracellular, golgi	29.77	16.04
Bra007873.1-P	Field mustard	cytosol	22.79	15.56
Bra003990.1-P	Field mustard	plastid	20.93	15.0
KRH68153	Soybean	cytosol	20.93	14.42
Bra039646.1-P	Field mustard	plastid	28.37	13.77
Bra020540.1-P	Field mustard	cytosol	19.07	13.71
Bra031322.1-P	Field mustard	cytosol, plastid	19.53	13.55
Bra001785.1-P	Field mustard	nucleus	17.67	13.48
Bra003989.1-P	Field mustard	plastid	18.14	13.45
Bra023852.1-P	Field mustard	cytosol	20.0	13.44
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	21.4	13.14
Bra001660.1-P	Field mustard	cytosol	17.21	12.89
Bra036573.1-P	Field mustard	extracellular	20.47	12.57
Bra004405.1-P	Field mustard	plastid	20.93	12.3
Bra036572.1-P	Field mustard	extracellular	19.53	12.21
Bra020541.1-P	Field mustard	extracellular	19.07	11.68
Bra009894.1-P	Field mustard	cytosol	12.56	10.59
Bra034175.1-P	Field mustard	cytosol, plastid	15.35	9.88
Bra022923.1-P	Field mustard	cytosol	13.02	9.15
Bra005554.1-P	Field mustard	cytosol	13.02	9.09
Bra037411.1-P	Field mustard	mitochondrion	11.63	8.74
Bra007874.1-P	Field mustard	cytosol	14.88	8.0
Bra037358.1-P	Field mustard	cytosol	10.23	7.64
Bra001787.1-P	Field mustard	endoplasmic reticulum	32.56	7.53

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.2	EnsemblPlantsGene:Bra003839	EnsemblPlants:Bra003839.1	EnsemblPlants:Bra003839.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR002083
InterPro:IPR008974	UniProt:M4CI06	InterPro:MATH/TRAF_dom	PFAM:PF00917	PFscan:PS50144	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	UniParc:UPI0002541726	SEG:seg

Description

AT1G58270 (E=8e-047) ZW9 | ZW9

Coordinates

chrA07:+:15297325..15299197

Molecular Weight (calculated)

24526.9 Da

IEP (calculated)

6.537

GRAVY (calculated)

-0.327

Length

215 amino acids

Sequence
(BLAST)

001: MYTEDKKKNT NYGSIFVYCF FGFVLVVGVV RYAKPYYNLQ SLMETGAVIE EAFLDVEKSL PSASRSSVSV PARNHQKLSS TVNEETRTRP PISYCVKFES
101: FSTMANLVKD NGEKYESRPF SAGGYNWTFL IYPNENKPEG SGGYISLYVK IDNSSLITYQ NEVYAWIKFL IYKSNTDTYY EYHDIKNTST GFLVKDTIKI
201: EVEILAFSRA DAVSN

Best Arabidopsis Sequence Match ( AT1G58270.1 )
(BLAST)

001: MYSEEKKSRN YGSIFVYCFF CFVLIVEVAR FAKPYINLQN LIETEAVVEE GFMAVGNSGN LPCGSSKPSS ASVRAHDEQK LSQAVTTDTR TRPPNSYCVK
101: FQSFVTMAKQ VKENGGKYES RPFSVGGYNW TLLIYPVIYI PTDSGGYVSI YVRVDNSSLI TNPKDVYAEI TFLAYKSSTD KYQISQETEA QRFHLFKQQW
201: GLLQFLPIYY FENPAYGYFF EGESVVFGVD INIVKPFENW EVFSNEQNIR DPIFEWRLTK FSTRFLDSYT SDSFSSGGRN WALKVYPNGV GNATGNSLSL
301: YLLSDQSNDK GYVEAKLRVI DQIQSNNFEK KVAAWPNATE NGWGFDRFLS FADIKNTSKG FLVNDTLKLE VQILSFSKTD YYSHQSSLNV LTGDST

Arabidopsis Description

ZW9At1g58270/F19C14_8 [Source:UniProtKB/TrEMBL;Acc:Q9SLV3]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.