Factsheet for Bra040904.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50083	Canola	endoplasmic reticulum, vacuole	98.43	98.69
AT3G20370.1	Thale cress	extracellular, plasma membrane	74.08	74.67
Bra040903.1-P	Field mustard	extracellular, vacuole	68.59	68.59
Bra001786.1-P	Field mustard	extracellular, golgi	65.71	62.91
Bra035787.1-P	Field mustard	vacuole	66.23	62.62
Bra000640.1-P	Field mustard	cytosol	52.09	62.19
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	56.02	59.94
Bra001785.1-P	Field mustard	nucleus	43.72	59.22
AT3G20380.1	Thale cress	extracellular, vacuole	55.76	56.8
Bra007873.1-P	Field mustard	cytosol	35.86	43.49
Bra003989.1-P	Field mustard	plastid	30.1	39.66
Bra023852.1-P	Field mustard	cytosol	32.98	39.38
Bra031322.1-P	Field mustard	cytosol, plastid	31.68	39.03
Bra003990.1-P	Field mustard	plastid	29.32	37.33
Bra004405.1-P	Field mustard	plastid	35.6	37.16
Bra003837.1-P	Field mustard	cytosol	31.15	35.31
Bra009894.1-P	Field mustard	cytosol	23.04	34.51
Bra001660.1-P	Field mustard	cytosol	25.39	33.8
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	33.25	33.25
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	30.1	32.86
Bra034175.1-P	Field mustard	cytosol, plastid	28.53	32.63
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	17.54	31.16
Bra036573.1-P	Field mustard	extracellular	28.53	31.14
Bra003836.1-P	Field mustard	extracellular, golgi	18.32	30.84
Bra020541.1-P	Field mustard	extracellular	28.27	30.77
Bra001787.1-P	Field mustard	endoplasmic reticulum	74.61	30.65
Bra020540.1-P	Field mustard	cytosol	23.82	30.43
Bra036572.1-P	Field mustard	extracellular	27.23	30.23
KRH68153	Soybean	cytosol	24.35	29.81
Bra039646.1-P	Field mustard	plastid	32.46	27.99
Bra007874.1-P	Field mustard	cytosol	27.49	26.25
Bra037411.1-P	Field mustard	mitochondrion	19.11	25.52
Bra037358.1-P	Field mustard	cytosol	17.28	22.92
Bra022923.1-P	Field mustard	cytosol	18.32	22.88
Bra005554.1-P	Field mustard	cytosol	15.97	19.81

Protein Annotations

EnsemblPlants:Bra040904.1	EnsemblPlants:Bra040904.1-P	EnsemblPlantsGene:Bra040904	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SignalP:SignalP-noTM	SMART:SM00061	SUPFAM:SSF49599
TMHMM:TMhelix	UniParc:UPI000253EA57	UniProt:M4FIH5	MapMan:35.2	:	:

Description

AT3G20370 (E=6e-169) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrScaffold000303:+:8285..10097

Molecular Weight (calculated)

43750.2 Da

IEP (calculated)

6.881

GRAVY (calculated)

-0.399

Length

382 amino acids

Sequence
(BLAST)

001: MISHYRNTIS VVYLLVCCIF ITSSSASSFL RQFTDDFNTN LQQENGAGPN PNVGEADHLH QHQEISSRDH KVSVSSTVNG LRDRIPSSYS LKMESFNKLL
101: NSPYTERYQS RPFTVGGYNW TLMVYPNGNK KDSGSGYLSL YVAIDNSTLV AGQQEVYADL RFYVFNNNER KYFTIQDTNV WRFNVFKTMW GFSQVLPVAT
201: FKDPANGYLY DGDHCEFGVD VTIPTTYQIS ELFSIADNFY NPKFTWTIRG FSTLFKATYY SDLFSIGGRT WTIQVNPSGR GTGAGKALSM YLNLDVNEKF
301: RPYEKIYVRG KLRVLNQRGL NNIERQLDIW YQGPGYGEYS WGYHEFISFS DLRDSAKGFV VNDVLMVQAE LEDISSTKYL PN

Best Arabidopsis Sequence Match ( AT3G20370.1 )
(BLAST)

001: MASHYRNTSA IAYLLLCLFI TSATAHSFIR QITDDLKTNL QQEVGAEPIQ NLDVGHYLQE NKEISSRDYK VSASNAVKGL RDRPPSSYSL KMESFNTLLK
101: STYTEKYVSR PFSVGGYNWT LVVFPNGNKK DSGSGYLSLY VAIDNSTLGQ QEIYADLRFY IFNKNERKYF TIQDTDVWKF SVFKTMWGFS QVLPIDTFKD
201: PTKGYLYDGD HCEFGVDVTM PSLYEKSELF SVTENFLNPR FTWTIRGFST LLKNSYLSEV FSIGGRSWNI QINPSGLGTG EGKALSMYLG LNVNEIFRPY
301: EKIYVRAKLR ALNQLNLSNI ERELDIWYNG PGYGEYSWGF PEFIYFPYLT DSSKGFVKND VLMVQVEMEA ISSTKYFPS

Arabidopsis Description

AT3g20370/MQC12_13 [Source:UniProtKB/TrEMBL;Acc:Q9LTQ5]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.