Factsheet for Bra037411.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
peroxisome 1
plasma membrane 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012351.1-P
Bra024548.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00780.1	Bra012351.1-P	AT1G22920.1	21798944
AT4G00780.1	Bra024548.1-P	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51713	Canola	cytosol	100.0	96.95
AT4G00780.1	Thale cress	cytosol	68.88	65.89
AT4G01390.1	Thale cress	cytosol	66.08	63.0
Bra037358.1-P	Field mustard	cytosol	56.99	56.6
Bra005554.1-P	Field mustard	cytosol	30.07	27.92
Bra022923.1-P	Field mustard	cytosol	29.72	27.78
Bra009894.1-P	Field mustard	cytosol	22.38	25.1
Bra001785.1-P	Field mustard	nucleus	24.48	24.82
Bra001660.1-P	Field mustard	cytosol	24.83	24.74
Bra007873.1-P	Field mustard	cytosol	25.52	23.17
KRH68153	Soybean	cytosol	25.17	23.08
Bra020540.1-P	Field mustard	cytosol	23.43	22.41
Bra036573.1-P	Field mustard	extracellular	26.22	21.43
Bra009895.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	26.22	21.43
Bra020541.1-P	Field mustard	extracellular	25.17	20.51
Bra036572.1-P	Field mustard	extracellular	24.48	20.35
Bra031322.1-P	Field mustard	cytosol, plastid	21.33	19.68
Bra040903.1-P	Field mustard	extracellular, vacuole	26.22	19.63
Bra040904.1-P	Field mustard	extracellular, vacuole	25.52	19.11
Bra001786.1-P	Field mustard	extracellular, golgi	26.57	19.05
Bra003990.1-P	Field mustard	plastid	19.93	19.0
Bra004405.1-P	Field mustard	plastid	24.13	18.85
Bra023852.1-P	Field mustard	cytosol	20.63	18.44
Bra003837.1-P	Field mustard	cytosol	21.68	18.4
Bra003989.1-P	Field mustard	plastid	18.53	18.28
Bra000640.1-P	Field mustard	cytosol	20.28	18.12
Bra035787.1-P	Field mustard	vacuole	25.52	18.07
Bra015981.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	24.13	18.06
Bra032150.1-P	Field mustard	endoplasmic reticulum, vacuole	22.38	17.93
Bra034175.1-P	Field mustard	cytosol, plastid	19.23	16.47
Bra039646.1-P	Field mustard	plastid	23.78	15.35
Bra007874.1-P	Field mustard	cytosol	19.23	13.75
Bra003836.1-P	Field mustard	extracellular, golgi	9.79	12.33
Bra003839.1-P	Field mustard	cytosol, extracellular, plasma membrane	8.74	11.63
Bra001787.1-P	Field mustard	endoplasmic reticulum	26.57	8.17

Protein Annotations

EnsemblPlants:Bra037411.1	EnsemblPlants:Bra037411.1-P	EnsemblPlantsGene:Bra037411	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR26379
PANTHER:PTHR26379:SF213	PFAM:PF00917	PFscan:PS50144	SMART:SM00061	SUPFAM:SSF49599	UniParc:UPI0002542085
UniProt:M4F8J9	MapMan:35.2	:	:	:	:

Description

AT4G00780 (E=6e-112) | meprin and TRAF homology domain-containing protein / MATH domain-containing protein

Coordinates

chrA09:+:654716..655940

Molecular Weight (calculated)

32819.3 Da

IEP (calculated)

8.756

GRAVY (calculated)

-0.357

Length

286 amino acids

Sequence
(BLAST)

001: MVRVFKSRHR TSHLFKIDNF SLFKKYQLEK VNSSVFDLGG HKWTLRVFPN GRKNASGHYV SIFLMSQASV NVKIEYELFV VSQLEQKWES SGHREFGIHP
101: KPTGKGNPKL ISLVDLERNG YLIGDSCMCG VKLHGIEPAE SGTAECFSLI EKPLNNKVTW MMTRFSSFDP EKAHHSHEFV VGNRKWRIQV HPRGFEEEKD
201: ESFSVYLLGE GFINNASKTE TYAKFKLRVL DQVNRNHVEK TCSGWLETSK GFADFMCLTK LVEPYLVNDK LYVGVDFEVV SVATYC

Best Arabidopsis Sequence Match ( AT4G00780.1 )
(BLAST)

001: MSRPIPIEEM VRLFKIRHTT SHLFKIDNFS LLKKHGIEKV ESSVFDLAGH KWKLSVYPNG HKNAKGTHVS MFLVNQVPVN DMPTYELLVV SQLERKWHTH
101: GRDEFDINPE PASEGFLRFI SLADLERKGF LIGDCCMFGV KFHGIEPANP GTAECFSLIE KPLNHKVTWM MSKFSSFNPG KAHQSNEFVV GTRKWRLEVH
201: PRGYMDEKDK SFSVYLSAEG FVNNAPMTKT YAKFKLRVLD QVSWNHVEES GLSWFDAEPS DQSGFADFMP LGKLNEPYLV KDKLYVGVEF EVVSTTYYC

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZ38]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.