Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G58270.1 | Thale cress | golgi, plasma membrane, vacuole | 42.97 | 40.15 |
| AT3G46190.2 | Thale cress | cytosol | 33.51 | 39.87 |
| AT3G22085.1 | Thale cress | cytosol | 28.92 | 36.77 |
| AT3G22080.1 | Thale cress | mitochondrion | 31.08 | 36.62 |
| AT3G20360.1 | Thale cress | endoplasmic reticulum, extracellular | 35.41 | 36.09 |
| AT3G20370.1 | Thale cress | extracellular, plasma membrane | 36.76 | 35.88 |
| AT1G69660.1 | Thale cress | cytosol | 22.16 | 35.5 |
| AT1G69650.1 | Thale cress | plastid | 27.84 | 35.03 |
| AT1G65050.1 | Thale cress | cytosol, mitochondrion | 14.32 | 32.72 |
| KRH68153 | Soybean | cytosol | 27.57 | 32.69 |
| AT3G20380.1 | Thale cress | extracellular, vacuole | 32.7 | 32.27 |
| AT1G65150.2 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 24.32 | 30.41 |
| AT1G65370.1 | Thale cress | cytosol | 18.65 | 30.4 |
| AT4G09770.4 | Thale cress | cytosol | 26.22 | 30.03 |
| AT3G17380.1 | Thale cress | cytosol | 24.32 | 29.13 |
| AT2G15710.1 | Thale cress | cytosol | 28.11 | 28.49 |
| AT5G26260.1 | Thale cress | extracellular | 25.41 | 26.78 |
| AT4G00780.1 | Thale cress | cytosol | 21.62 | 26.76 |
| AT5G26290.1 | Thale cress | extracellular | 24.05 | 26.49 |
| AT5G26320.1 | Thale cress | vacuole | 24.32 | 25.57 |
| AT5G26280.3 | Thale cress | plastid | 25.41 | 25.47 |
| AT5G26300.1 | Thale cress | extracellular | 23.78 | 25.21 |
| AT4G01390.1 | Thale cress | cytosol | 19.73 | 24.33 |
| AT2G32880.1 | Thale cress | cytosol | 20.27 | 23.58 |
| AT2G04170.1 | Thale cress | mitochondrion | 25.14 | 22.14 |
| AT4G09780.1 | Thale cress | endoplasmic reticulum, golgi | 24.32 | 21.08 |
| AT2G04190.1 | Thale cress | cytosol | 22.43 | 20.19 |
| AT2G32870.1 | Thale cress | cytosol | 19.46 | 17.31 |
Protein Annotations
| Gene3D:2.60.210.10 | MapMan:35.2 | EntrezGene:822448 | ProteinID:AEE77418.1 | EMBL:AF372976 | ArrayExpress:AT3G28220 |
| EnsemblPlantsGene:AT3G28220 | RefSeq:AT3G28220 | TAIR:AT3G28220 | RefSeq:AT3G28220-TAIR-G | EnsemblPlants:AT3G28220.1 | TAIR:AT3G28220.1 |
| EMBL:AY133588 | ProteinID:BAB02639.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0009536 | GO:GO:0009941 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | RefSeq:NP_189462.1 |
| PFAM:PF00917 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50144 | PANTHER:PTHR26379 |
| PANTHER:PTHR26379:SF213 | UniProt:Q9LHA6 | SMART:SM00061 | SUPFAM:SSF49599 | TMHMM:TMhelix | InterPro:TRAF-like |
| UniParc:UPI000009F7B5 | SEG:seg | : | : | : | : |
Description
AT3g28220/T19D11_3 [Source:UniProtKB/TrEMBL;Acc:Q9LHA6]
Coordinates
chr3:+:10524181..10526733
Molecular Weight (calculated)
42888.9 Da
IEP (calculated)
8.800
GRAVY (calculated)
-0.425
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEKGLIKKE DHMFQEEKRK TNYGAIGLAC FISCFFAFQF MKIVTTQPST TTTSSIAVID SPMSSHKLSD RREIWRVIPP STYCLKIESF IKFATSPNAE
101: KYESRPFESG GYNWTLIVYP KGNIKEGAPL NYVSMYVQID NSTLLNSPKE VYAEVKFFIY NRKEDKYLTY QETDAKRFFL FKPYWGYGNV RPYTDVANPN
201: AGWLFDGDNV LFGVDVFVTE VFNKWEVFSF TKSLHDRLYK WTLPNFSSLE KQYYVSDKFV IGGRSWALKV YPSGDGEGQG NSLSLYVVAV DVKPYDKIYL
301: KAKLRIINQR DSKHMEKKVE SWSDQANSWG FQKFVPFADL KDTSKGLLVN DTLKMEIEFE DFSNTKYFPS
101: KYESRPFESG GYNWTLIVYP KGNIKEGAPL NYVSMYVQID NSTLLNSPKE VYAEVKFFIY NRKEDKYLTY QETDAKRFFL FKPYWGYGNV RPYTDVANPN
201: AGWLFDGDNV LFGVDVFVTE VFNKWEVFSF TKSLHDRLYK WTLPNFSSLE KQYYVSDKFV IGGRSWALKV YPSGDGEGQG NSLSLYVVAV DVKPYDKIYL
301: KAKLRIINQR DSKHMEKKVE SWSDQANSWG FQKFVPFADL KDTSKGLLVN DTLKMEIEFE DFSNTKYFPS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.