Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT2G32880.1 Thale cress cytosol 57.45 75.16
CDY23783 Canola cytosol 45.43 61.36
Bra005554.1-P Field mustard cytosol 43.03 58.12
CDY12160 Canola cytosol 41.11 54.98
CDY60616 Canola cytosol, mitochondrion, plastid 36.3 52.43
AT4G01390.1 Thale cress cytosol 24.52 34.0
AT4G00780.1 Thale cress cytosol 24.04 33.44
AT4G09770.4 Thale cress cytosol 19.47 25.08
KRH68153 Soybean cytosol 18.03 24.04
AT3G17380.1 Thale cress cytosol 16.59 22.33
AT5G26290.1 Thale cress extracellular 18.03 22.32
AT3G46190.2 Thale cress cytosol 16.59 22.19
AT5G26280.3 Thale cress plastid 19.47 21.95
AT5G26260.1 Thale cress extracellular 18.27 21.65
AT3G22085.1 Thale cress cytosol 15.14 21.65
AT5G26320.1 Thale cress vacuole 18.27 21.59
AT5G26300.1 Thale cress extracellular 17.79 21.2
AT1G69660.1 Thale cress cytosol 11.54 20.78
AT3G22080.1 Thale cress mitochondrion 15.62 20.7
AT3G28220.1 Thale cress cytosol 17.31 19.46
AT1G69650.1 Thale cress plastid 13.7 19.39
AT1G65370.1 Thale cress cytosol 10.58 19.38
AT3G20360.1 Thale cress endoplasmic reticulum, extracellular 16.59 19.01
AT1G65150.2 Thale cress cytosol, mitochondrion, nucleus, plastid 13.22 18.58
AT1G65050.1 Thale cress cytosol, mitochondrion 7.21 18.52
AT2G04190.1 Thale cress cytosol 18.03 18.25
AT3G20370.1 Thale cress extracellular, plasma membrane 16.35 17.94
AT1G58270.1 Thale cress golgi, plasma membrane, vacuole 17.07 17.93
AT2G04170.1 Thale cress mitochondrion 18.03 17.86
AT4G09780.1 Thale cress endoplasmic reticulum, golgi 18.27 17.8
AT2G15710.1 Thale cress cytosol 15.14 17.26
AT3G20380.1 Thale cress extracellular, vacuole 14.9 16.53
Protein Annotations
Gene3D:2.60.210.10MapMan:35.1EntrezGene:817848ProteinID:AEC08755.1ArrayExpress:AT2G32870EnsemblPlantsGene:AT2G32870
RefSeq:AT2G32870TAIR:AT2G32870RefSeq:AT2G32870-TAIR-GEnsemblPlants:AT2G32870.1TAIR:AT2G32870.1Unigene:At.43883
UniProt:F4IUR7GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR002083InterPro:IPR008974
InterPro:MATH/TRAF_domRefSeq:NP_180846.3PFAM:PF00917PO:PO:0000293PO:PO:0020030PFscan:PS50144
PANTHER:PTHR26379PANTHER:PTHR26379:SF213SMART:SM00061SUPFAM:SSF49599InterPro:TRAF-likeUniParc:UPI000034EDF8
SEG:seg:::::
Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4IUR7]
Coordinates
chr2:-:13944538..13946790
Molecular Weight (calculated)
48329.1 Da
IEP (calculated)
9.918
GRAVY (calculated)
-0.491
Length
416 amino acids
Sequence
(BLAST)
001: MNNSFRNKIH EQSKENLSDD RHKKSDRTLI VFNRKTPLYF YFFEQVRYIT GSIYILIETP SSRNLPIYSN ICIPISSHPN TNYRPKKRKK NPPTVYLTTI
101: ILIMGLLSLE DTIKEKLKDR KNAHFMLVDG MSKLLTEKVK NCQSLDFQVS GVKWRLVIRL SRGRKDHLSF VLEITDEKCT GSTWDVKFNF KIGIVPQTGP
201: DYCFVLVGHQ NEKKRSQGLA NFISHTDLKE RFLVNDKAGF YAEISDVQPN FPVTRIPRTM GTAERFKLIE FSPKNSRFTW KITQFSSFDG EEHSSYEFTV
301: GPRRWKLVMY PKGNGDGKGN SLSLYLFASD YVTNGPKGGT LAIYKLRVLD QLNRNHCETE CRYWFPYNPV NQMDSLWGRP KFLPLEELHK SSRGFLVNDQ
401: IYIGVEISIV STTEYL
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.