Factsheet for AT4G09780.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

endoplasmic reticulum 4
golgi 4
extracellular 3
mitochondrion 2
vacuole 2
plasma membrane 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G09770.4	Thale cress	cytosol	62.3	82.35
AT5G26300.1	Thale cress	extracellular	31.15	38.11
AT5G26280.3	Thale cress	plastid	32.55	37.67
AT5G26260.1	Thale cress	extracellular	30.21	36.75
AT5G26320.1	Thale cress	vacuole	29.27	35.51
AT5G26290.1	Thale cress	extracellular	27.4	34.82
AT2G04190.1	Thale cress	cytosol	27.4	28.47
AT3G22085.1	Thale cress	cytosol	19.2	28.18
AT2G04170.1	Thale cress	mitochondrion	27.63	28.1
AT1G65050.1	Thale cress	cytosol, mitochondrion	10.54	27.78
KRH68153	Soybean	cytosol	19.67	26.92
AT4G00780.1	Thale cress	cytosol	18.74	26.76
AT3G22080.1	Thale cress	mitochondrion	19.44	26.43
AT4G01390.1	Thale cress	cytosol	18.03	25.67
AT3G17380.1	Thale cress	cytosol	18.5	25.57
AT3G20360.1	Thale cress	endoplasmic reticulum, extracellular	21.31	25.07
AT3G20370.1	Thale cress	extracellular, plasma membrane	21.78	24.54
AT3G28220.1	Thale cress	cytosol	21.08	24.32
AT3G20380.1	Thale cress	extracellular, vacuole	21.31	24.27
AT1G69660.1	Thale cress	cytosol	13.11	24.24
AT2G15710.1	Thale cress	cytosol	20.61	24.11
AT1G65150.2	Thale cress	cytosol, mitochondrion, nucleus, plastid	16.63	23.99
AT1G69650.1	Thale cress	plastid	16.16	23.47
AT2G32880.1	Thale cress	cytosol	17.33	23.27
AT1G65370.1	Thale cress	cytosol	12.18	22.91
AT3G46190.2	Thale cress	cytosol	16.63	22.83
AT1G58270.1	Thale cress	golgi, plasma membrane, vacuole	20.61	22.22
AT2G32870.1	Thale cress	cytosol	17.8	18.27

Protein Annotations

Gene3D:2.60.210.10	MapMan:35.1	EntrezGene:826567	ProteinID:AEE82797.1	ArrayExpress:AT4G09780	EnsemblPlantsGene:AT4G09780
RefSeq:AT4G09780	TAIR:AT4G09780	RefSeq:AT4G09780-TAIR-G	EnsemblPlants:AT4G09780.1	TAIR:AT4G09780.1	Unigene:At.54240
UniProt:F4JKT0	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002083	InterPro:IPR008974
InterPro:MATH/TRAF_dom	RefSeq:NP_192716.2	PFAM:PF00917	PFscan:PS50144	PANTHER:PTHR26379	PANTHER:PTHR26379:SF214
SMART:SM00061	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI0001E92EE0	SEG:seg	:

Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4JKT0]

Coordinates

chr4:-:6159538..6161378

Molecular Weight (calculated)

49659.0 Da

IEP (calculated)

9.272

GRAVY (calculated)

-0.302

Length

427 amino acids

Sequence
(BLAST)

001: MTLFSRVLLF LKKKSFSIAV SSLYFYICKS HFCLPYIYTT LKSTIFCPKK FIIMETLREE APSSYLMKLV GFSEVKFSHQ PYESADFDAA GHKWRLIFYP
101: AGKVEEGGKD HISIYARVEN VGASEMQIDV ELKFFLYNHN AKKYSVFQDG TVKHYSKEKK ECGFAQMLLR SKFNDPKNGY TDGDACIVGV EIFVIKPIEK
201: VERVVFTQNP PTNKFTWKIS DFSKLGDKKY HYSDEFVVGE RKWRIKISPK GDKKVRALSV YVQAMEYLPN AVASTTYAKL KLQLMNQKNT NHIEKRGTYQ
301: TSFFLYLVFH FFSREKEDGY GTSELISVED LNDESKGYLV EDTIVLETTL LCVTETKVKL CDMCKYKFFL LNPRQHAKSH WKKKKNMHNH LLQLWCNPHN
401: RLYVFGVVFL GLFDNVDASA EGEVYQI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.