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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 3
  • mitochondrion 3
  • nucleus 1
  • plasma membrane 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G69660.1 Thale cress cytosol 42.36 57.58
AT1G69650.1 Thale cress plastid 50.96 54.42
AT3G22085.1 Thale cress cytosol 47.77 51.55
AT1G65370.1 Thale cress cytosol 32.8 45.37
AT1G65150.2 Thale cress cytosol, mitochondrion, nucleus, plastid 41.72 44.26
AT1G65050.1 Thale cress cytosol, mitochondrion 22.61 43.83
AT2G15710.1 Thale cress cytosol 50.64 43.56
AT3G46190.2 Thale cress cytosol 32.8 33.12
AT3G20360.1 Thale cress endoplasmic reticulum, extracellular 37.58 32.51
AT3G20370.1 Thale cress extracellular, plasma membrane 39.17 32.45
AT3G28220.1 Thale cress cytosol 36.62 31.08
AT3G17380.1 Thale cress cytosol 28.34 28.8
AT3G20380.1 Thale cress extracellular, vacuole 34.39 28.8
KRH68153 Soybean cytosol 28.03 28.21
AT1G58270.1 Thale cress golgi, plasma membrane, vacuole 35.35 28.03
AT4G09770.4 Thale cress cytosol 27.71 26.93
AT5G26300.1 Thale cress extracellular 29.3 26.36
AT5G26290.1 Thale cress extracellular 27.71 25.89
AT5G26260.1 Thale cress extracellular 27.07 24.22
AT5G26280.3 Thale cress plastid 28.34 24.12
AT5G26320.1 Thale cress vacuole 26.75 23.86
AT4G00780.1 Thale cress cytosol 21.66 22.74
AT2G32880.1 Thale cress cytosol 21.97 21.7
AT4G01390.1 Thale cress cytosol 20.38 21.33
AT2G04190.1 Thale cress cytosol 27.39 20.92
AT2G04170.1 Thale cress mitochondrion 27.39 20.48
AT4G09780.1 Thale cress endoplasmic reticulum, golgi 26.43 19.44
AT2G32870.1 Thale cress cytosol 20.7 15.62
Protein Annotations
Gene3D:2.60.210.10MapMan:35.2EntrezGene:821770ProteinID:AEE76587.2ArrayExpress:AT3G22080EnsemblPlantsGene:AT3G22080
RefSeq:AT3G22080TAIR:AT3G22080RefSeq:AT3G22080-TAIR-GEnsemblPlants:AT3G22080.1TAIR:AT3G22080.1UniProt:F4IYY5
GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0016787InterPro:IPR002083
InterPro:IPR008974InterPro:MATH/TRAF_domRefSeq:NP_188846.3PFAM:PF00917PFscan:PS50144PANTHER:PTHR26379
PANTHER:PTHR26379:SF213SMART:SM00061SUPFAM:SSF49599InterPro:TRAF-likeUniParc:UPI000848BFE0:
Description
Ubiquitin carboxyl-terminal hydrolase-like protein [Source:UniProtKB/TrEMBL;Acc:F4IYY5]
Coordinates
chr3:-:7777818..7779243
Molecular Weight (calculated)
36319.0 Da
IEP (calculated)
8.833
GRAVY (calculated)
-0.423
Length
314 amino acids
Sequence
(BLAST)
001: MMCSSVSSTT LRSWRERTPN SYSLKLQNIS QVEKSTLFSD GKYQSRLFSS GGYNWRMIIY PKGNRKDDGS GFISMYVEID STSLLTTPTT EVFADLRFFV
101: FNKKENKYYT IQHVESKLFN AFRTIWGLAQ VLPVDTFTDP KNGYIFEGDQ CEFGVDVIVA APPTNWEIHT LHEALSQPKF FWTVKNFSEL NNNVYTSGNF
201: SMRERKWVLK LYPKGDVKGD RKWLSLYLYL DQSETLKESE KIFVQAQLRV LDPRGSNHVT HKISSWYTSS NTAWGYRKFV SLAEIPKAYL DKDTLKVQID
301: VEVVSEAEFS PSMI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.