Factsheet for PGSC0003DMT400087617

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075825	Potato	cytosol	80.0	80.31
PGSC0003DMT400092776	Potato	cytosol	79.22	68.24
Solyc04g008530.1.1	Tomato	cytosol	59.61	61.29
PGSC0003DMT400091007	Potato	cytosol	71.37	49.46
PGSC0003DMT400092154	Potato	cytosol	48.24	41.14
PGSC0003DMT400075830	Potato	mitochondrion	78.43	40.4
PGSC0003DMT400016438	Potato	cytosol	46.67	39.67
PGSC0003DMT400001814	Potato	cytosol	45.49	32.77
PGSC0003DMT400022188	Potato	cytosol	29.02	30.58
PGSC0003DMT400001816	Potato	cytosol	40.0	25.25

Protein Annotations

EnsemblPlants:PGSC0003DMT400087617	EnsemblPlantsGene:PGSC0003DMG400037188	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR24007	PANTHER:PTHR24007:SF12
PFAM:PF00917	PFscan:PS50144	PGSC:PGSC0003DMG400037188	SEG:seg	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI000294B40E	UniProt:M1DE71	MapMan:35.1	:	:	:

Description

Meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400037188]

Coordinates

chr4:+:3539556..3541741

Molecular Weight (calculated)

28868.7 Da

IEP (calculated)

8.668

GRAVY (calculated)

-0.211

Length

255 amino acids

Sequence
(BLAST)

001: MIIHPNGDGD GTGHISIYLA VIGASLLDSV CEVNASFSFL IFNQIHDNFT VMKGMERRFR NIKTEWGFSK CICHKTFKDP SNGYLVDDKC IFGVDVYVIK
101: NQRIGECMSL LKGIELYKNE WKITKFTKLK KRAYYSEEFT VEGYKWKLLL YPTGDSRQNG QNISIFLESV DAKGFDRQKS VKAKFSISVK NRISGYKHHK
201: KSGGVNWYSA TASGWGWSSF MGCCEFNDPK KGFLIEDCCI VEAEVSVVGV VNCLT

Best Arabidopsis Sequence Match ( AT3G20360.1 )
(BLAST)

001: MMSYHYINTL CIVISLLSCL FITSSFAGPV PNQENGSQKI FPTQISSRDS KVSLSSTVKG LRERPPSSYS LKMESFNTLM KSVYTERYES RPFRVGRYNW
101: TLVVYPKGNK NDNGTGHISL YVVLDNSTLT SQSEEVHVDL RFYVFNKKET KYFTIQDTDV WRFSAIKRMW GFSKVLPLIT FNNLKNGYLY DVDHCEFGVD
201: VIIPPFYEKS EVFSVTKSFP SPRFTWYIQG YSTLPTDYLS EEFIIGGKSW NLRIFKNGFG AFEGKNLSLY LNLGPQELLK AKPYDKVYVR AKLRVPNQFG
301: SQSNLVLERP LDNWFSPQTI GWGYADFMPL SDLRNSSKGF LVNDMLVVQV AMEEISSTNY LPK

Arabidopsis Description

AT3g20360/MQC12_11 [Source:UniProtKB/TrEMBL;Acc:Q8W0Z1]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.