Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400092154 | Potato | cytosol | 72.0 | 72.24 |
PGSC0003DMT400001814 | Potato | cytosol | 70.0 | 59.32 |
PGSC0003DMT400092776 | Potato | cytosol | 49.67 | 50.34 |
PGSC0003DMT400075825 | Potato | cytosol | 40.33 | 47.64 |
PGSC0003DMT400087617 | Potato | cytosol | 39.67 | 46.67 |
PGSC0003DMT400001816 | Potato | cytosol | 50.0 | 37.13 |
PGSC0003DMT400022188 | Potato | cytosol | 26.33 | 32.64 |
PGSC0003DMT400091007 | Potato | cytosol | 34.67 | 28.26 |
PGSC0003DMT400075830 | Potato | mitochondrion | 38.0 | 23.03 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400016438 | EnsemblPlantsGene:PGSC0003DMG400006424 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 |
PFAM:PF00917 | PFscan:PS50144 | PGSC:PGSC0003DMG400006424 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 |
UniParc:UPI0002951B5D | UniProt:M1A7N2 | MapMan:35.2 | : | : | : |
Description
Meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006424]
Coordinates
chr7:+:45341703..45342928
Molecular Weight (calculated)
34390.0 Da
IEP (calculated)
8.336
GRAVY (calculated)
-0.319
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: VAMEIREASP THYLLKIESF SLLSESGIDK FESNEFKAGD YKWKMIIYPN GNTHENGSEH ISAYLAISGT SSLPPGWEVN VIFTFFVFNQ LTDNYLSVRG
101: NMRRFQSIKS LWGLPKFLSH KAFKEASNGY LVDDKCVFGA EIFVVQRQAI SECLSIVKPN GSFKREWKIC KFSNLDKLWL SEEFIVGGYK WQLKLYPKGE
201: ADNKECDIAI YLHSVDSNNF DHHQKLKAKY NINLKNQING GHKKLSYCNW FSAASRTWGY ASYMPLTQLH DKKNGYLVDD CIVVEVELEV VLKQSVKSLS
101: NMRRFQSIKS LWGLPKFLSH KAFKEASNGY LVDDKCVFGA EIFVVQRQAI SECLSIVKPN GSFKREWKIC KFSNLDKLWL SEEFIVGGYK WQLKLYPKGE
201: ADNKECDIAI YLHSVDSNNF DHHQKLKAKY NINLKNQING GHKKLSYCNW FSAASRTWGY ASYMPLTQLH DKKNGYLVDD CIVVEVELEV VLKQSVKSLS
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.