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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400092154 Potato cytosol 72.0 72.24
PGSC0003DMT400001814 Potato cytosol 70.0 59.32
PGSC0003DMT400092776 Potato cytosol 49.67 50.34
PGSC0003DMT400075825 Potato cytosol 40.33 47.64
PGSC0003DMT400087617 Potato cytosol 39.67 46.67
PGSC0003DMT400001816 Potato cytosol 50.0 37.13
PGSC0003DMT400022188 Potato cytosol 26.33 32.64
PGSC0003DMT400091007 Potato cytosol 34.67 28.26
PGSC0003DMT400075830 Potato mitochondrion 38.0 23.03
Protein Annotations
EnsemblPlants:PGSC0003DMT400016438EnsemblPlantsGene:PGSC0003DMG400006424Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF213
PFAM:PF00917PFscan:PS50144PGSC:PGSC0003DMG400006424SEG:segSMART:SM00061SUPFAM:SSF49599
UniParc:UPI0002951B5DUniProt:M1A7N2MapMan:35.2:::
Description
Meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006424]
Coordinates
chr7:+:45341703..45342928
Molecular Weight (calculated)
34390.0 Da
IEP (calculated)
8.336
GRAVY (calculated)
-0.319
Length
300 amino acids
Sequence
(BLAST)
001: VAMEIREASP THYLLKIESF SLLSESGIDK FESNEFKAGD YKWKMIIYPN GNTHENGSEH ISAYLAISGT SSLPPGWEVN VIFTFFVFNQ LTDNYLSVRG
101: NMRRFQSIKS LWGLPKFLSH KAFKEASNGY LVDDKCVFGA EIFVVQRQAI SECLSIVKPN GSFKREWKIC KFSNLDKLWL SEEFIVGGYK WQLKLYPKGE
201: ADNKECDIAI YLHSVDSNNF DHHQKLKAKY NINLKNQING GHKKLSYCNW FSAASRTWGY ASYMPLTQLH DKKNGYLVDD CIVVEVELEV VLKQSVKSLS
Best Arabidopsis Sequence Match ( AT3G17380.1 )
(BLAST)
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.