Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400087617 | Potato | cytosol | 80.31 | 80.0 |
| PGSC0003DMT400092776 | Potato | cytosol | 80.71 | 69.26 |
| Solyc04g008530.1.1 | Tomato | cytosol | 65.35 | 66.94 |
| PGSC0003DMT400091007 | Potato | cytosol | 72.05 | 49.73 |
| PGSC0003DMT400075830 | Potato | mitochondrion | 83.07 | 42.63 |
| PGSC0003DMT400016438 | Potato | cytosol | 47.64 | 40.33 |
| PGSC0003DMT400092154 | Potato | cytosol | 47.24 | 40.13 |
| PGSC0003DMT400022188 | Potato | cytosol | 32.28 | 33.88 |
| PGSC0003DMT400001814 | Potato | cytosol | 46.85 | 33.62 |
| PGSC0003DMT400001816 | Potato | cytosol | 38.58 | 24.26 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400075825 | EnsemblPlantsGene:PGSC0003DMG400029480 | EntrezGene:102585291 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR24007 |
| PANTHER:PTHR24007:SF12 | PFAM:PF00917 | PFscan:PS50144 | PGSC:PGSC0003DMG400029480 | RefSeq:XP_015167604.1 | SEG:seg |
| SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI000294E8EB | UniProt:M1CVS8 | MapMan:35.2 | : |
Description
Meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029480]
Coordinates
chr4:+:3543905..3545299
Molecular Weight (calculated)
28751.5 Da
IEP (calculated)
9.115
GRAVY (calculated)
-0.298
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIYPDGDGD GAGHISVYLA IIGKTSLHAV WEVNVSFSFL IFDQIHDSYN VMKGMERHFR NIKTEWGFSK CISHKTFKDP SNGYLVNDKC VVGVDVYVIK
101: NQGIGECMSL LKGTKLYKHE WKITKFTKLK KKVYYSEEFI VDGYKWKLSL YPTGDNRQNG KNISVFLESV DAKGFNRQKR VQAKFGISLK NQIGGEHHKK
201: SGSSNWYSAA TKGWGWSSFM SCCEFNDTKK GFLIEDCCIL EAEVSVVGVV NSLT
101: NQGIGECMSL LKGTKLYKHE WKITKFTKLK KKVYYSEEFI VDGYKWKLSL YPTGDNRQNG KNISVFLESV DAKGFNRQKR VQAKFGISLK NQIGGEHHKK
201: SGSSNWYSAA TKGWGWSSFM SCCEFNDTKK GFLIEDCCIL EAEVSVVGVV NSLT
001: MNNQKWSIGF ISLAFLFITS SSAEFIIQQV TKGRGIEYNS SYSLEENLGV TRELREERPS SKIVTITSFS VIKGRGEPYE SSVFEAAGYK WRLVLYVNGN
101: KNDGGNDHIS LYARIEETNS LPLGWEVNVD LKLFVHNGKL HKYLTVTDGL VKRYNNAKKE WGFGQLIPRS TFYNANEGYL DQDTGSFGAE IFIVKPAQQQ
201: EKVTFISNPP NNVFTWKILR FSTLEDKFYY SDDFLVEDRY WRLGFNPKGD GGGRPHALPI FLFAQGHKAN AVATNTWGAV NLRLKNQRST NHRQIYSAAW
301: YPIGSGYGVG VNNIILLADL NDASKGYLVN DAIIFEAEMV KVSITNIVSA
101: KNDGGNDHIS LYARIEETNS LPLGWEVNVD LKLFVHNGKL HKYLTVTDGL VKRYNNAKKE WGFGQLIPRS TFYNANEGYL DQDTGSFGAE IFIVKPAQQQ
201: EKVTFISNPP NNVFTWKILR FSTLEDKFYY SDDFLVEDRY WRLGFNPKGD GGGRPHALPI FLFAQGHKAN AVATNTWGAV NLRLKNQRST NHRQIYSAAW
301: YPIGSGYGVG VNNIILLADL NDASKGYLVN DAIIFEAEMV KVSITNIVSA
Arabidopsis Description
TRAF-like family protein [Source:TAIR;Acc:AT5G26280]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.