Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400092154 | Potato | cytosol | 62.43 | 73.91 |
| PGSC0003DMT400016438 | Potato | cytosol | 59.32 | 70.0 |
| PGSC0003DMT400092776 | Potato | cytosol | 41.24 | 49.32 |
| PGSC0003DMT400075825 | Potato | cytosol | 33.62 | 46.85 |
| PGSC0003DMT400087617 | Potato | cytosol | 32.77 | 45.49 |
| PGSC0003DMT400001816 | Potato | cytosol | 44.07 | 38.61 |
| PGSC0003DMT400022188 | Potato | cytosol | 22.88 | 33.47 |
| PGSC0003DMT400091007 | Potato | cytosol | 28.81 | 27.72 |
| PGSC0003DMT400075830 | Potato | mitochondrion | 32.77 | 23.43 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400001814 | EnsemblPlantsGene:PGSC0003DMG400000679 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 |
| PFAM:PF00917 | PFscan:PS50144 | PGSC:PGSC0003DMG400000679 | SMART:SM00061 | SUPFAM:SSF49599 | UniParc:UPI00029657F3 |
| UniProt:M0ZJ51 | MapMan:35.1 | : | : | : | : |
Description
Meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000679]
Coordinates
chr7:+:45321542..45326442
Molecular Weight (calculated)
40156.9 Da
IEP (calculated)
7.985
GRAVY (calculated)
-0.299
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVRDASPAH YLLKIESFSL LSESGIDKFE SNEFEAGGHK WKLLLYPNGV ANKVTVEVRD APPGHYLLKI ESFSLLSENG IDKFESNEFE AAGYKWKMVI
101: YPNGNTDENG SGHISVYLAI SETTSLPAGW EVNAIFTFFM FNQLRDNYLS VRGKMRRFQP FKSLWGLAKF LSHDTFKEAS NGYLVDNKCV VGAEIFVVQR
201: QAIGECLSMV KSSSSFKREL KICNFSNLNE NWLSEEFTVG DYKWKLLVYP QGSVTSNGGN ISIYLNCVDA KDFNQHKKVD VKCSLNLKDQ INGGGKNRSY
301: CSWYSNTTSS LGYPNFMPLT QLRDRKKGYL VKDCIIVEVE LEVIAFKHRI KSLC
101: YPNGNTDENG SGHISVYLAI SETTSLPAGW EVNAIFTFFM FNQLRDNYLS VRGKMRRFQP FKSLWGLAKF LSHDTFKEAS NGYLVDNKCV VGAEIFVVQR
201: QAIGECLSMV KSSSSFKREL KICNFSNLNE NWLSEEFTVG DYKWKLLVYP QGSVTSNGGN ISIYLNCVDA KDFNQHKKVD VKCSLNLKDQ INGGGKNRSY
301: CSWYSNTTSS LGYPNFMPLT QLRDRKKGYL VKDCIIVEVE LEVIAFKHRI KSLC
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.