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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400016438 Potato cytosol 72.24 72.0
PGSC0003DMT400001814 Potato cytosol 73.91 62.43
PGSC0003DMT400092776 Potato cytosol 50.5 51.01
PGSC0003DMT400087617 Potato cytosol 41.14 48.24
PGSC0003DMT400075825 Potato cytosol 40.13 47.24
PGSC0003DMT400001816 Potato cytosol 50.84 37.62
PGSC0003DMT400022188 Potato cytosol 26.09 32.23
PGSC0003DMT400091007 Potato cytosol 33.11 26.9
PGSC0003DMT400075830 Potato mitochondrion 39.46 23.84
Protein Annotations
EnsemblPlants:PGSC0003DMT400092154EnsemblPlantsGene:PGSC0003DMG400041725Gene3D:2.60.210.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002083InterPro:IPR008974InterPro:MATH/TRAF_domInterPro:TRAF-likePANTHER:PTHR26379PANTHER:PTHR26379:SF213
PFAM:PF00917PFscan:PS50144PGSC:PGSC0003DMG400041725SMART:SM00061SUPFAM:SSF49599UniParc:UPI00029669AC
UniProt:M1DP75MapMan:35.1::::
Description
Meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400041725]
Coordinates
chr7:+:45348433..45349704
Molecular Weight (calculated)
34414.5 Da
IEP (calculated)
9.473
GRAVY (calculated)
-0.224
Length
299 amino acids
Sequence
(BLAST)
001: MMEIRDASPT HYSLKIESFS LLSESGIDKF ESNVFNAGGY KWKMIIYPNG NTRENGSGHI SVYLAITGLN SMRAGWEVNA IFTFFVFNQL RDNYLSVRGK
101: MRRFQPIKTL WGLPKFLSHK TFKDPSNGYL VDDKCVFGAE IFIIHRQAIG ECLSMVKSND LFKRQWNICN FSKLRKDWLS EEFTVGGYNW KLLVYPQGNV
201: TSKGCYISIY LKFVNAKDFN QHQKVKANCS IILKDQINGA CKKLSYCEWF SSTAPTWGFS GYMPLTQLYD EKNGYLVKDC IVVEVDLKVV FKHSVRNLS
Best Arabidopsis Sequence Match ( AT3G17380.1 )
(BLAST)
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.