Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075825 | Potato | cytosol | 49.73 | 72.05 |
| PGSC0003DMT400087617 | Potato | cytosol | 49.46 | 71.37 |
| PGSC0003DMT400092776 | Potato | cytosol | 48.1 | 59.8 |
| Solyc04g008530.1.1 | Tomato | cytosol | 36.41 | 54.03 |
| PGSC0003DMT400075830 | Potato | mitochondrion | 61.96 | 46.06 |
| PGSC0003DMT400016438 | Potato | cytosol | 28.26 | 34.67 |
| PGSC0003DMT400092154 | Potato | cytosol | 26.9 | 33.11 |
| PGSC0003DMT400022188 | Potato | cytosol | 19.29 | 29.34 |
| PGSC0003DMT400001814 | Potato | cytosol | 27.72 | 28.81 |
| PGSC0003DMT400001816 | Potato | cytosol | 22.83 | 20.79 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400091007 | EnsemblPlantsGene:PGSC0003DMG400040578 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 |
| PFAM:PF00917 | PFscan:PS50144 | PGSC:PGSC0003DMG400040578 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 |
| UniParc:UPI0002968795 | UniProt:M1DLP6 | MapMan:35.1 | : | : | : |
Description
Meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400040578]
Coordinates
chr4:+:3520996..3525310
Molecular Weight (calculated)
41599.8 Da
IEP (calculated)
6.503
GRAVY (calculated)
-0.122
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIHPDGYGD GARHISEYLA IIGTSSLHAA WEVNASFSFL IFDQIHDNYN VIKDSRTKFV LMQEWRCVFA ISRLNGVPQN VSLIKHSKIP LMVNYLVNDK
101: CIFGVDVYVI KNQGIGECMS LLNGTPNLSK HEWKITEFSK LKNEVYYFEE FTVDGYKWKR SLYPTGDSKL NGQNISVFLE SVDAKRFDRQ KCVRAKFSIS
201: VKNRNSGCKH NKMMELSMEN ITNSLPTRYL LKIESFSLLL ENGISKYESN EFESGGFNWK MIIHPNGDGD GDGAGHISIY LAVIGASLLH SVHELNASFS
301: FLIVDQIHDN FTVMKGGLNW YSAATDNWGW PSFMPCCEFN DPKKGFLIED CCIVEAEVSV VGVVNCLT
101: CIFGVDVYVI KNQGIGECMS LLNGTPNLSK HEWKITEFSK LKNEVYYFEE FTVDGYKWKR SLYPTGDSKL NGQNISVFLE SVDAKRFDRQ KCVRAKFSIS
201: VKNRNSGCKH NKMMELSMEN ITNSLPTRYL LKIESFSLLL ENGISKYESN EFESGGFNWK MIIHPNGDGD GDGAGHISIY LAVIGASLLH SVHELNASFS
301: FLIVDQIHDN FTVMKGGLNW YSAATDNWGW PSFMPCCEFN DPKKGFLIED CCIVEAEVSV VGVVNCLT
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.