Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075825 | Potato | cytosol | 69.26 | 80.71 |
| PGSC0003DMT400087617 | Potato | cytosol | 68.24 | 79.22 |
| Solyc04g008530.1.1 | Tomato | cytosol | 63.85 | 76.21 |
| PGSC0003DMT400092154 | Potato | cytosol | 51.01 | 50.5 |
| PGSC0003DMT400016438 | Potato | cytosol | 50.34 | 49.67 |
| PGSC0003DMT400091007 | Potato | cytosol | 59.8 | 48.1 |
| PGSC0003DMT400075830 | Potato | mitochondrion | 74.66 | 44.65 |
| PGSC0003DMT400001814 | Potato | cytosol | 49.32 | 41.24 |
| PGSC0003DMT400022188 | Potato | cytosol | 26.01 | 31.82 |
| PGSC0003DMT400001816 | Potato | cytosol | 39.53 | 28.96 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400092776 | EnsemblPlantsGene:PGSC0003DMG400042347 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom | InterPro:TRAF-like | PANTHER:PTHR24007 | PANTHER:PTHR24007:SF12 |
| PFAM:PF00917 | PFscan:PS50144 | PGSC:PGSC0003DMG400042347 | SEG:seg | SMART:SM00061 | SUPFAM:SSF49599 |
| UniParc:UPI000294B8DF | UniProt:M1DQI4 | MapMan:35.2 | : | : | : |
Description
Meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400042347]
Coordinates
chr4:+:3527425..3529125
Molecular Weight (calculated)
33729.9 Da
IEP (calculated)
6.707
GRAVY (calculated)
-0.380
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKSRDASSP TRYLLKIESF SLLSENGIYK YESNEFESGG FNWKMIIHPE GEGEGDGDGH ISVYLAIIEK SAVWEVNASF SFLIFDQIHD NYTVMKGMER
101: RFRNIKNEWG FSKCISHKTF KDPSNGYLVN DKCVFGVDVY VIKNQGIGEC MSLMNGTRVY KHEWKITEFT KLKKKVYSEE FTVGDYKWKL SLYPTGDIQQ
201: NGKNISIFLV SVDANGFDRQ KRVKANFTIS LKNRFDGEHH KFSGGAHWYS AAANSWGWSS FMGCCELNDP KNGFLIEDCC IVEAEVSVVG VVNCLT
101: RFRNIKNEWG FSKCISHKTF KDPSNGYLVN DKCVFGVDVY VIKNQGIGEC MSLMNGTRVY KHEWKITEFT KLKKKVYSEE FTVGDYKWKL SLYPTGDIQQ
201: NGKNISIFLV SVDANGFDRQ KRVKANFTIS LKNRFDGEHH KFSGGAHWYS AAANSWGWSS FMGCCELNDP KNGFLIEDCC IVEAEVSVVG VVNCLT
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.