Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400092154 | Potato | cytosol | 37.62 | 50.84 |
| PGSC0003DMT400016438 | Potato | cytosol | 37.13 | 50.0 |
| PGSC0003DMT400001814 | Potato | cytosol | 38.61 | 44.07 |
| PGSC0003DMT400087617 | Potato | cytosol | 25.25 | 40.0 |
| PGSC0003DMT400092776 | Potato | cytosol | 28.96 | 39.53 |
| PGSC0003DMT400075825 | Potato | cytosol | 24.26 | 38.58 |
| PGSC0003DMT400022188 | Potato | cytosol | 18.07 | 30.17 |
| PGSC0003DMT400091007 | Potato | cytosol | 20.79 | 22.83 |
| PGSC0003DMT400075830 | Potato | mitochondrion | 24.5 | 20.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400001816 | EnsemblPlantsGene:PGSC0003DMG400000680 | Gene3D:2.60.210.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:MATH/TRAF_dom |
| InterPro:TRAF-like | PANTHER:PTHR26379 | PANTHER:PTHR26379:SF213 | PFAM:PF00917 | PFscan:PS50144 | PGSC:PGSC0003DMG400000680 |
| SUPFAM:SSF49599 | TMHMM:TMhelix | UniParc:UPI000296EF0C | UniProt:M0ZJ52 | MapMan:35.2 | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000680]
Coordinates
chr7:+:45310122..45318616
Molecular Weight (calculated)
46548.0 Da
IEP (calculated)
8.366
GRAVY (calculated)
-0.108
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MYQSDRSLYV MYRSDTSLYD VSVGYITLRC IGTYVMYRDR VALTSLNQMN LRLVVINGKM RHFQPIKSIW GLAKFISHNT FKEASNGYLV DDKCVLGAEI
101: FIVQRQAIGE CLSMVKSTDS FKREWKICNF SKLGENWVSE EFTVGGYKWK LSLYPKGNAN NKGCDISIFL KSVDAKDFDH HEKVKAVNAI FTFFVFNQLR
201: DNYLSARGKM RRFQSIKSFW GLAKFISHNT FKETSNGYFV DDKCVVGAEI FVVQGQGIGE CLSMVKSTDS FKREWKICSF SNLGEEWFSE EFNVDDYKWK
301: LWLFPKGNGN SEGCDISIFL KSVDAKDFDH HQKVKANCSI SLKDQINGGC KKLSCKPNVF FFSICSLLIF YMEFLQDEYH CDSIATSLFH NIIFLFGCLI
401: VSIF
101: FIVQRQAIGE CLSMVKSTDS FKREWKICNF SKLGENWVSE EFTVGGYKWK LSLYPKGNAN NKGCDISIFL KSVDAKDFDH HEKVKAVNAI FTFFVFNQLR
201: DNYLSARGKM RRFQSIKSFW GLAKFISHNT FKETSNGYFV DDKCVVGAEI FVVQGQGIGE CLSMVKSTDS FKREWKICSF SNLGEEWFSE EFNVDDYKWK
301: LWLFPKGNGN SEGCDISIFL KSVDAKDFDH HQKVKANCSI SLKDQINGGC KKLSCKPNVF FFSICSLLIF YMEFLQDEYH CDSIATSLFH NIIFLFGCLI
401: VSIF
001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI
Arabidopsis Description
TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.