Factsheet for PGSC0003DMT400075830

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075825	Potato	cytosol	42.63	83.07
PGSC0003DMT400087617	Potato	cytosol	40.4	78.43
PGSC0003DMT400092776	Potato	cytosol	44.65	74.66
Solyc04g008530.1.1	Tomato	cytosol	32.32	64.52
PGSC0003DMT400091007	Potato	cytosol	46.06	61.96
PGSC0003DMT400092154	Potato	cytosol	23.84	39.46
PGSC0003DMT400016438	Potato	cytosol	23.03	38.0
PGSC0003DMT400001814	Potato	cytosol	23.43	32.77
PGSC0003DMT400022188	Potato	cytosol	15.15	30.99
PGSC0003DMT400001816	Potato	cytosol	20.0	24.5

Protein Annotations

EnsemblPlants:PGSC0003DMT400075830	EnsemblPlantsGene:PGSC0003DMG400029481	Gene3D:2.60.210.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002083	InterPro:IPR008974	InterPro:MATH/TRAF_dom	InterPro:TRAF-like	PANTHER:PTHR24007	PANTHER:PTHR24007:SF12
PFAM:PF00917	PFscan:PS50144	PGSC:PGSC0003DMG400029481	SEG:seg	SMART:SM00061	SUPFAM:SSF49599
UniParc:UPI0002968048	UniProt:M1CVS9	MapMan:35.2	:	:	:

Description

Meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029481]

Coordinates

chr4:+:3532168..3536321

Molecular Weight (calculated)

56431.4 Da

IEP (calculated)

7.984

GRAVY (calculated)

-0.327

Length

495 amino acids

Sequence
(BLAST)

001: MIIHPEGEGD GDGHISVYLA IIEKRAVWEV NASFSFLIFD QIHDNYNVMK GMERRFRNIK TEWGFSKCIS HETFKDPSNG YLVNDKCIFG VDVYVIKKQG
101: IGECMSLMNG TRVYNHEWKI TEFTKLKKKV YYSEEFTVED YKWKLSLYPT GDIGQNGKNI SVFLESVDAK GFDRQKRVKA KFSISLKNWI GDEHHKKSGG
201: LNWYSVAANS WGWSSFMGCR ELNDPKNGFL IEDCCIVEAE GMGWPGPAWI GSVLVPVVSA LVITVLGMGR TRGKSRLAWT WSRKMIIHPE GEGDGDGHIS
301: VYLAIIEKSA VWEVNASFSF LIFDQIHDNY NVMKGMERRF RNIKNEWGFS KCISHKTFKD PSNGYLGNDK CVFGVDVYVI KNQGIGNFRY ILQVTSDKMV
401: RTSPSFLNQF DAEGFDRQKR VQANFSISLK NQIGDEHHKK SDNIANWYSA ATKGWGWSSF MPCCELNDPK KGFLIEDCCI VEAEVSVVRV VNCLT

Best Arabidopsis Sequence Match ( AT3G17380.1 )
(BLAST)

001: MASSGDYDEI IKSISDAPPT HYMVKIESFS LLTKHAIERY ETESFEAGGY KWKLVLYPNG NKSKNTKDHV SVYLSLADSS SLSPGWEVYA VFRLYLLDQN
101: KDNYLILQGN ERRFHSVKRE WGFDKFIPTG TFSDASNGYL MEDTCMFGAD VFVSKERRSG RGECLSMIKD ATSSKHVWKI ENFSKLDKES YDSNAFFAGD
201: RKWKIEFYPT GTKQGTGTHL SIYLTLVDPE TISDGTKIFV EFTIRIFDQL QGRHIAGKVT KWFSRSSSEH GWVKYVSMVY FTQPNSGLLL KDVCLVEADV
301: CVHGITSAI

Arabidopsis Description

TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4J556]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.