Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69542 | Canola | cytosol | 100.0 | 100.0 |
| CDX78618 | Canola | cytosol | 100.0 | 100.0 |
| CDX85058 | Canola | cytosol | 100.0 | 100.0 |
| CDX85559 | Canola | extracellular | 100.0 | 100.0 |
| CDX91003 | Canola | cytosol | 100.0 | 100.0 |
| AT5G15200.1 | Thale cress | cytosol | 97.97 | 97.47 |
| GSMUA_Achr8P30200_001 | Banana | cytosol | 87.31 | 87.31 |
| GSMUA_Achr1P13080_001 | Banana | plasma membrane | 86.8 | 86.8 |
| GSMUA_Achr2P06950_001 | Banana | cytosol | 86.8 | 86.8 |
| GSMUA_Achr8P10060_001 | Banana | cytosol | 86.8 | 86.8 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 86.29 | 86.29 |
| Solyc05g007250.2.1 | Tomato | nucleus | 86.29 | 86.29 |
| VIT_17s0000g05970.t01 | Wine grape | cytosol | 85.79 | 85.79 |
| VIT_14s0108g00460.t01 | Wine grape | cytosol | 85.79 | 85.79 |
| Solyc01g010540.2.1 | Tomato | cytosol, mitochondrion | 85.79 | 85.79 |
| Solyc01g010580.2.1 | Tomato | cytosol, mitochondrion | 85.79 | 85.79 |
| Solyc04g005680.2.1 | Tomato | nucleus, plastid, unclear | 85.79 | 85.79 |
| PGSC0003DMT400007431 | Potato | cytosol | 85.28 | 85.28 |
| PGSC0003DMT400059349 | Potato | cytosol | 85.28 | 85.28 |
| VIT_01s0026g02110.t01 | Wine grape | cytosol | 85.28 | 85.28 |
| KRH56926 | Soybean | mitochondrion | 84.26 | 84.26 |
| KRH03454 | Soybean | mitochondrion | 84.26 | 84.26 |
| KRH63367 | Soybean | nucleus | 83.76 | 83.76 |
| KRH54535 | Soybean | cytosol | 83.76 | 83.76 |
| Zm00001d047186_P001 | Maize | extracellular, plasma membrane | 80.2 | 81.87 |
| Os03t0379500-01 | Rice | cytosol | 43.15 | 81.73 |
| EER99750 | Sorghum | cytosol | 79.7 | 80.93 |
| Zm00001d006924_P001 | Maize | plastid | 79.19 | 80.83 |
| OQU90309 | Sorghum | cytosol | 79.19 | 80.41 |
| Os03t0154700-01 | Rice | mitochondrion | 78.68 | 79.49 |
| Os11t0602600-01 | Rice | nucleus | 78.68 | 79.49 |
| TraesCS2B01G183500.1 | Wheat | cytosol, mitochondrion | 77.67 | 78.46 |
| TraesCS2D01G164100.1 | Wheat | golgi, unclear | 77.67 | 78.46 |
| Zm00001d041760_P001 | Maize | plasma membrane, plastid | 77.16 | 78.35 |
| EES15996 | Sorghum | cytosol | 77.16 | 77.95 |
| Zm00001d022218_P001 | Maize | plastid | 69.04 | 77.27 |
| TraesCS5D01G121600.1 | Wheat | cytosol, mitochondrion | 75.13 | 75.9 |
| HORVU5Hr1G038920.1 | Barley | plasma membrane | 75.13 | 75.9 |
| TraesCS5B01G112200.1 | Wheat | golgi, nucleus, unclear | 75.13 | 75.9 |
| TraesCS5A01G104000.1 | Wheat | cytosol, mitochondrion | 75.13 | 75.9 |
| Zm00001d029340_P003 | Maize | cytosol | 50.76 | 71.94 |
| OQU92521 | Sorghum | mitochondrion | 72.59 | 71.86 |
| Os11t0602500-00 | Rice | cytosol | 76.14 | 71.77 |
| Zm00001d022223_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 36.04 | 66.98 |
| HORVU2Hr1G028510.1 | Barley | cytosol | 77.67 | 64.83 |
| Os07t0628400-00 | Rice | cytosol | 28.43 | 60.22 |
| Zm00001d006923_P003 | Maize | cytosol | 64.97 | 52.67 |
Protein Annotations
| MapMan:17.1.3.1.10 | Gene3D:3.10.290.10 | GO:A0A078CU15 | EnsemblPlants:CDX70599 | ProteinID:CDX70599 | ProteinID:CDX70599.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0019538 |
| GO:GO:0019843 | EnsemblPlantsGene:GSBRNA2T00140443001 | InterPro:IPR002942 | InterPro:IPR036986 | PFAM:PF00163 | PFAM:PF01479 |
| ScanProsite:PS00632 | PFscan:PS50889 | PANTHER:PTHR11831 | PANTHER:PTHR11831:SF21 | InterPro:Ribosomal_S4/S9 | InterPro:Ribosomal_S4/S9_N |
| InterPro:Ribosomal_S4/S9_euk/arc | InterPro:Ribosomal_S4_CS | InterPro:S4_RNA-bd | InterPro:S4_RNA-bd_sf | SMART:SM00363 | SMART:SM01390 |
| SUPFAM:SSF55174 | TIGRFAMs:TIGR01018 | UniParc:UPI000253FC0E | SEG:seg | : | : |
Description
BnaC03g06830D
Coordinates
chrLK031791:-:1181747..1183303
Molecular Weight (calculated)
22935.7 Da
IEP (calculated)
10.740
GRAVY (calculated)
-0.767
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHVCYYRNY GKTFKGPRRP FEKERLDSEL KLVGEYGLRN KRELWRVQYS LSRIRNAARD LLTLDEKNPK RIFEGEALLR KMNRYGLLDE SQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHSRVL IRQRHIRVGK QLVNIPSFMV RLDSQKHIDF ALTSPFGGGR PGRVKRRNEK SASKKASGGD ADGDDEE
101: LTVENFLERR LQTIVFKSGM AKSIHHSRVL IRQRHIRVGK QLVNIPSFMV RLDSQKHIDF ALTSPFGGGR PGRVKRRNEK SASKKASGGD ADGDDEE
001: MVHVCYYRNY GKTFKGPRRP YEKERLDSEL KLVGEYGLRN KRELWRVQYS LSRIRNAARD LLTLDEKSPR RIFEGEALLR RMNRYGLLDE SQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHSRVL IRQRHIRVGK QLVNIPSFMV RLDSQKHIDF ALTSPFGGGR PGRVKRRNEK SASKKASGGG DADGDDEE
101: LTVENFLERR LQTIVFKSGM AKSIHHSRVL IRQRHIRVGK QLVNIPSFMV RLDSQKHIDF ALTSPFGGGR PGRVKRRNEK SASKKASGGG DADGDDEE
Arabidopsis Description
RPS9B40S ribosomal protein S9-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.