Factsheet for TraesCS2D01G164100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G183500.1	Wheat	cytosol, mitochondrion	100.0	100.0
Zm00001d006924_P001	Maize	plastid	90.77	91.71
EER99750	Sorghum	cytosol	90.77	91.24
OQU90309	Sorghum	cytosol	90.26	90.72
TraesCS5D01G121600.1	Wheat	cytosol, mitochondrion	85.64	85.64
Zm00001d022218_P001	Maize	plastid	74.87	82.95
GSMUA_Achr1P13080_001	Banana	plasma membrane	82.56	81.73
KRH56926	Soybean	mitochondrion	82.56	81.73
KRH03454	Soybean	mitochondrion	82.56	81.73
GSMUA_Achr8P10060_001	Banana	cytosol	82.56	81.73
GSMUA_Achr2P06950_001	Banana	cytosol	82.56	81.73
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	82.05	81.22
VIT_14s0108g00460.t01	Wine grape	cytosol	82.05	81.22
GSMUA_Achr8P30200_001	Banana	cytosol	82.05	81.22
VIT_17s0000g05970.t01	Wine grape	cytosol	82.05	81.22
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	81.54	80.71
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	81.54	80.71
Solyc04g005680.2.1	Tomato	nucleus, plastid, unclear	81.54	80.71
PGSC0003DMT400059349	Potato	cytosol	81.54	80.71
Solyc05g007250.2.1	Tomato	nucleus	81.03	80.2
PGSC0003DMT400007431	Potato	cytosol	81.03	80.2
AT5G39850.1	Thale cress	cytosol, mitochondrion	81.03	80.2
KRH63367	Soybean	nucleus	81.03	80.2
KRH54535	Soybean	cytosol	81.03	80.2
VIT_01s0026g02110.t01	Wine grape	cytosol	80.51	79.7
HORVU2Hr1G028510.1	Barley	cytosol	95.9	79.24
AT5G15200.1	Thale cress	cytosol	79.49	78.28
CDX91003	Canola	cytosol	78.46	77.67
CDX85559	Canola	extracellular	78.46	77.67
CDX85058	Canola	cytosol	78.46	77.67
CDX78618	Canola	cytosol	78.46	77.67
CDX70599	Canola	cytosol	78.46	77.67
CDX69542	Canola	cytosol	78.46	77.67
Bra008713.1-P	Field mustard	cytosol	78.46	77.67
Bra006289.1-P	Field mustard	cytosol	78.46	77.67
Bra023511.1-P	Field mustard	cytosol	76.41	75.63
Zm00001d022223_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	40.0	73.58
Os07t0628400-00	Rice	cytosol	33.33	69.89

Protein Annotations

MapMan:17.1.3.1.10	Gene3D:3.10.290.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0019843	InterPro:IPR002942	InterPro:IPR036986	PFAM:PF00163
PFAM:PF01479	PFscan:PS50889	PANTHER:PTHR11831	PANTHER:PTHR11831:SF21	InterPro:Ribosomal_S4/S9	InterPro:Ribosomal_S4/S9_N
InterPro:Ribosomal_S4/S9_euk/arc	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363	SMART:SM01390	SUPFAM:SSF55174
TIGRFAMs:TIGR01018	EnsemblPlantsGene:TraesCS2D01G164100	EnsemblPlants:TraesCS2D01G164100.1	TIGR:cd00165	SEG:seg	:

Description

No Description!

Coordinates

chr2D:+:108924867..108928007

Molecular Weight (calculated)

22680.5 Da

IEP (calculated)

10.790

GRAVY (calculated)

-0.762

Length

195 amino acids

Sequence
(BLAST)

001: MVHVNFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRA KRELYRVQYA LSRIRNAARE LLTLDEKNPR RIFEGAALLR RMNRYGLLTE EQNKLDYVLA
101: LTVDNFLQRR LQTIVFKNGM AKSIHHARVL IRQRHIRVGK QLVNIPSFMV RVDTEKHVDF SLTSPLGGGQ PGRVKRKNQK KASGGGGDDG EEEED

Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)

001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE

Arabidopsis Description

RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.