CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 27291164
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56926	Soybean	mitochondrion	100.0	100.0
KRH54535	Soybean	cytosol	98.48	98.48
KRH63367	Soybean	nucleus	98.48	98.48
VIT_17s0000g05970.t01	Wine grape	cytosol	95.94	95.94
VIT_14s0108g00460.t01	Wine grape	cytosol	95.94	95.94
GSMUA_Achr8P10060_001	Banana	cytosol	94.92	94.92
GSMUA_Achr2P06950_001	Banana	cytosol	94.92	94.92
GSMUA_Achr1P13080_001	Banana	plasma membrane	94.92	94.92
VIT_01s0026g02110.t01	Wine grape	cytosol	94.42	94.42
GSMUA_Achr8P30200_001	Banana	cytosol	94.42	94.42
Solyc04g005680.2.1	Tomato	nucleus, plastid, unclear	93.91	93.91
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	93.91	93.91
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	93.91	93.91
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	93.91	93.91
PGSC0003DMT400007431	Potato	cytosol	93.4	93.4
Solyc05g007250.2.1	Tomato	nucleus	93.4	93.4
PGSC0003DMT400059349	Potato	cytosol	92.89	92.89
AT5G39850.1	Thale cress	cytosol, mitochondrion	90.86	90.86
Os11t0602600-01	Rice	nucleus	85.79	86.67
Os03t0154700-01	Rice	mitochondrion	85.79	86.67
Zm00001d047186_P001	Maize	extracellular, plasma membrane	84.77	86.53
OQU90309	Sorghum	cytosol	84.26	85.57
Zm00001d006924_P001	Maize	plastid	83.76	85.49
EER99750	Sorghum	cytosol	83.76	85.05
AT5G15200.1	Thale cress	cytosol	85.28	84.85
CDX69542	Canola	cytosol	84.26	84.26
Bra006289.1-P	Field mustard	cytosol	84.26	84.26
Bra008713.1-P	Field mustard	cytosol	84.26	84.26
CDX70599	Canola	cytosol	84.26	84.26
CDX78618	Canola	cytosol	84.26	84.26
CDX85058	Canola	cytosol	84.26	84.26
CDX91003	Canola	cytosol	84.26	84.26
CDX85559	Canola	extracellular	84.26	84.26
EES15996	Sorghum	cytosol	82.23	83.08
Zm00001d022218_P001	Maize	plastid	74.11	82.95
TraesCS2B01G183500.1	Wheat	cytosol, mitochondrion	81.73	82.56
TraesCS2D01G164100.1	Wheat	golgi, unclear	81.73	82.56
Zm00001d041760_P001	Maize	plasma membrane, plastid	81.22	82.47
Bra023511.1-P	Field mustard	cytosol	82.23	82.23
TraesCS5B01G112200.1	Wheat	golgi, nucleus, unclear	80.2	81.03
TraesCS5D01G121600.1	Wheat	cytosol, mitochondrion	80.2	81.03
TraesCS5A01G104000.1	Wheat	cytosol, mitochondrion	80.2	81.03
HORVU5Hr1G038920.1	Barley	plasma membrane	80.2	81.03
Os03t0379500-01	Rice	cytosol	41.62	78.85
Os11t0602500-00	Rice	cytosol	82.23	77.51
Zm00001d029340_P003	Maize	cytosol	53.81	76.26
OQU92521	Sorghum	mitochondrion	76.65	75.88
Zm00001d022223_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	39.59	73.58
HORVU2Hr1G028510.1	Barley	cytosol	81.73	68.22
Os07t0628400-00	Rice	cytosol	31.47	66.67
Zm00001d006923_P003	Maize	cytosol	69.04	55.97

Protein Annotations

EntrezGene:100807649	MapMan:17.1.3.1.10	Gene3D:3.10.290.10	EMBL:ACUP02002802	EMBL:ACUP02010348	EnsemblPlantsGene:GLYMA_17G098600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0019538	GO:GO:0019843	GO:GO:0022627	GO:GO:0030529	GO:GO:0045903	UniProt:I1JZQ6
InterPro:IPR002942	InterPro:IPR036986	EnsemblPlants:KRH03454	ProteinID:KRH03454	ProteinID:KRH03454.1	ProteinID:KRH56926.1
PFAM:PF00163	PFAM:PF01479	ScanProsite:PS00632	PFscan:PS50889	PANTHER:PTHR11831	PANTHER:PTHR11831:SF16
InterPro:Ribosomal_S4/S9	InterPro:Ribosomal_S4/S9_N	InterPro:Ribosomal_S4/S9_euk/arc	InterPro:Ribosomal_S4_CS	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf
SMART:SM00363	SMART:SM01390	SUPFAM:SSF55174	TIGRFAMs:TIGR01018	UniParc:UPI0001BA87E5	SEG:seg

Description

hypothetical protein

Coordinates

chr17:-:7779339..7780765

Molecular Weight (calculated)

23068.0 Da

IEP (calculated)

10.980

GRAVY (calculated)

-0.730

Length

197 amino acids

Sequence
(BLAST)

001: MVHVSFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNNARN LLTLDEKNPR RIFEGEALLR RMFRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTLVFKSGM AKSIHHARVL IRQRHIRVGR QVVNIPSFMV RVDSQKHIDF SLTSPLGGGR PGRVKRKNQR AAAKKAAGGD GDEEDED

Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)

001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE

Arabidopsis Description

RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.