CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041760_P001	Maize	plasma membrane, plastid	97.44	97.94
HORVU5Hr1G038920.1	Barley	plasma membrane	94.87	94.87
TraesCS5D01G121600.1	Wheat	cytosol, mitochondrion	94.87	94.87
TraesCS5B01G112200.1	Wheat	golgi, nucleus, unclear	94.87	94.87
TraesCS5A01G104000.1	Wheat	cytosol, mitochondrion	94.87	94.87
EER99750	Sorghum	cytosol	89.74	90.21
OQU90309	Sorghum	cytosol	89.23	89.69
GSMUA_Achr1P13080_001	Banana	plasma membrane	85.64	84.77
GSMUA_Achr2P06950_001	Banana	cytosol	85.64	84.77
GSMUA_Achr8P10060_001	Banana	cytosol	85.64	84.77
Solyc04g005680.2.1	Tomato	nucleus, plastid, unclear	85.13	84.26
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	85.13	84.26
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	85.13	84.26
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	85.13	84.26
GSMUA_Achr8P30200_001	Banana	cytosol	85.13	84.26
Solyc05g007250.2.1	Tomato	nucleus	84.62	83.76
PGSC0003DMT400007431	Potato	cytosol	84.62	83.76
PGSC0003DMT400059349	Potato	cytosol	84.1	83.25
VIT_01s0026g02110.t01	Wine grape	cytosol	83.08	82.23
KRH03454	Soybean	mitochondrion	83.08	82.23
KRH56926	Soybean	mitochondrion	83.08	82.23
KRH63367	Soybean	nucleus	82.56	81.73
KRH54535	Soybean	cytosol	82.56	81.73
VIT_17s0000g05970.t01	Wine grape	cytosol	82.56	81.73
VIT_14s0108g00460.t01	Wine grape	cytosol	82.56	81.73
AT5G39850.1	Thale cress	cytosol, mitochondrion	81.54	80.71
OQU92521	Sorghum	mitochondrion	80.0	78.39
AT5G15200.1	Thale cress	cytosol	78.97	77.78
CDX85559	Canola	extracellular	77.95	77.16
CDX85058	Canola	cytosol	77.95	77.16
CDX78618	Canola	cytosol	77.95	77.16
CDX70599	Canola	cytosol	77.95	77.16
CDX69542	Canola	cytosol	77.95	77.16
Bra008713.1-P	Field mustard	cytosol	77.95	77.16
Bra006289.1-P	Field mustard	cytosol	77.95	77.16
CDX91003	Canola	cytosol	77.95	77.16
Bra023511.1-P	Field mustard	cytosol	76.41	75.63

Protein Annotations

MapMan:17.1.3.1.10	Gene3D:3.10.290.10	EntrezGene:8063282	UniProt:C5YNT6	EnsemblPlants:EES15996	ProteinID:EES15996
ProteinID:EES15996.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0019843	GO:GO:0022627	GO:GO:0030529	GO:GO:0045903
InterPro:IPR002942	InterPro:IPR036986	PFAM:PF00163	PFAM:PF01479	ScanProsite:PS00632	PFscan:PS50889
PANTHER:PTHR11831	PANTHER:PTHR11831:SF15	InterPro:Ribosomal_S4/S9	InterPro:Ribosomal_S4/S9_N	InterPro:Ribosomal_S4/S9_euk/arc	InterPro:Ribosomal_S4_CS
InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363	SMART:SM01390	EnsemblPlantsGene:SORBI_3008G100000	SUPFAM:SSF55174
unigene:Sbi.18143	TIGRFAMs:TIGR01018	UniParc:UPI0001A882CA	RefSeq:XP_002442158.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:47539924..47542398

Molecular Weight (calculated)

22460.4 Da

IEP (calculated)

10.938

GRAVY (calculated)

-0.641

Length

195 amino acids

Sequence
(BLAST)

001: MVHVSFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNAARH LLTLDEKNPR RIFEGEALLR RMNRYGLLAE GQNKLDYVLA
101: LTAENFLARR LQTLVFKAGM AKSIHHARVL IKQRHIRVGR QIVNVPSFMV RVESEKHIDF SLSSPFGGGP PGRVKRKNLK KASGGGGDGG DEDEE

Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)

001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE

Arabidopsis Description

RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.