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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
plasma membrane: 29385242
msms PMID: 29385242 doi
K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G104000.1 Wheat cytosol, mitochondrion 100.0 100.0
TraesCS5B01G112200.1 Wheat golgi, nucleus, unclear 100.0 100.0
TraesCS5D01G121600.1 Wheat cytosol, mitochondrion 100.0 100.0
Zm00001d041760_P001 Maize plasma membrane, plastid 95.38 95.88
EES15996 Sorghum cytosol 94.87 94.87
GSMUA_Achr8P10060_001 Banana cytosol 83.59 82.74
GSMUA_Achr1P13080_001 Banana plasma membrane 83.59 82.74
GSMUA_Achr2P06950_001 Banana cytosol 83.59 82.74
PGSC0003DMT400059349 Potato cytosol 83.08 82.23
Solyc01g010540.2.1 Tomato cytosol, mitochondrion 83.08 82.23
GSMUA_Achr8P30200_001 Banana cytosol 83.08 82.23
Solyc04g005680.2.1 Tomato nucleus, plastid, unclear 83.08 82.23
Solyc01g010580.2.1 Tomato cytosol, mitochondrion 83.08 82.23
GSMUA_Achr11P... Banana cytosol, mitochondrion 83.08 82.23
PGSC0003DMT400007431 Potato cytosol 82.56 81.73
Solyc05g007250.2.1 Tomato nucleus 82.56 81.73
KRH03454 Soybean mitochondrion 81.03 80.2
KRH56926 Soybean mitochondrion 81.03 80.2
VIT_17s0000g05970.t01 Wine grape cytosol 80.51 79.7
VIT_14s0108g00460.t01 Wine grape cytosol 80.51 79.7
VIT_01s0026g02110.t01 Wine grape cytosol 80.0 79.19
AT5G39850.1 Thale cress cytosol, mitochondrion 79.49 78.68
KRH63367 Soybean nucleus 79.49 78.68
KRH54535 Soybean cytosol 79.49 78.68
AT5G15200.1 Thale cress cytosol 76.92 75.76
CDX91003 Canola cytosol 75.9 75.13
CDX85559 Canola extracellular 75.9 75.13
CDX85058 Canola cytosol 75.9 75.13
CDX78618 Canola cytosol 75.9 75.13
CDX70599 Canola cytosol 75.9 75.13
CDX69542 Canola cytosol 75.9 75.13
Bra008713.1-P Field mustard cytosol 75.9 75.13
Bra006289.1-P Field mustard cytosol 75.9 75.13
Bra023511.1-P Field mustard cytosol 73.85 73.1
HORVU2Hr1G028510.1 Barley cytosol 87.18 72.03
Protein Annotations
MapMan:17.1.3.1.10Gene3D:3.10.290.10GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003735
GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0015935GO:GO:0019538GO:GO:0019843GO:GO:0030529EnsemblPlantsGene:HORVU5Hr1G038920EnsemblPlants:HORVU5Hr1G038920.1
InterPro:IPR002942InterPro:IPR036986UniProt:M0XW49PFAM:PF00163PFAM:PF01479ScanProsite:PS00632
PFscan:PS50889PANTHER:PTHR11831PANTHER:PTHR11831:SF15InterPro:Ribosomal_S4/S9InterPro:Ribosomal_S4/S9_NInterPro:Ribosomal_S4/S9_euk/arc
InterPro:Ribosomal_S4_CSInterPro:S4_RNA-bdInterPro:S4_RNA-bd_sfSMART:SM00363SMART:SM01390SUPFAM:SSF55174
TIGRFAMs:TIGR01018UniParc:UPI00016EBF0CSEG:seg:::
Description
No Description!
Coordinates
chrchr5H:+:280775389..280777931
Molecular Weight (calculated)
22489.4 Da
IEP (calculated)
10.985
GRAVY (calculated)
-0.638
Length
195 amino acids
Sequence
(BLAST)
001: MVHVNFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNAARH LLTLDEKNPR RIFEGAALLR RMNRYGLLAE GQDKLDYVLA
101: LTAENFLARR LQTLVFKAGM AKSIHHARVL IRQRHIRVGR QIVNVPSFMV RVESEKHIDF SLTSPFGGGP AGRVKRKNQK KASGGGDAGG DEEEE
Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)
001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE
Arabidopsis Description
RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.