Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5A01G104000.1 | Wheat | cytosol, mitochondrion | 100.0 | 100.0 |
TraesCS5B01G112200.1 | Wheat | golgi, nucleus, unclear | 100.0 | 100.0 |
TraesCS5D01G121600.1 | Wheat | cytosol, mitochondrion | 100.0 | 100.0 |
Zm00001d041760_P001 | Maize | plasma membrane, plastid | 95.38 | 95.88 |
EES15996 | Sorghum | cytosol | 94.87 | 94.87 |
GSMUA_Achr8P10060_001 | Banana | cytosol | 83.59 | 82.74 |
GSMUA_Achr1P13080_001 | Banana | plasma membrane | 83.59 | 82.74 |
GSMUA_Achr2P06950_001 | Banana | cytosol | 83.59 | 82.74 |
PGSC0003DMT400059349 | Potato | cytosol | 83.08 | 82.23 |
Solyc01g010540.2.1 | Tomato | cytosol, mitochondrion | 83.08 | 82.23 |
GSMUA_Achr8P30200_001 | Banana | cytosol | 83.08 | 82.23 |
Solyc04g005680.2.1 | Tomato | nucleus, plastid, unclear | 83.08 | 82.23 |
Solyc01g010580.2.1 | Tomato | cytosol, mitochondrion | 83.08 | 82.23 |
GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 83.08 | 82.23 |
PGSC0003DMT400007431 | Potato | cytosol | 82.56 | 81.73 |
Solyc05g007250.2.1 | Tomato | nucleus | 82.56 | 81.73 |
KRH03454 | Soybean | mitochondrion | 81.03 | 80.2 |
KRH56926 | Soybean | mitochondrion | 81.03 | 80.2 |
VIT_17s0000g05970.t01 | Wine grape | cytosol | 80.51 | 79.7 |
VIT_14s0108g00460.t01 | Wine grape | cytosol | 80.51 | 79.7 |
VIT_01s0026g02110.t01 | Wine grape | cytosol | 80.0 | 79.19 |
AT5G39850.1 | Thale cress | cytosol, mitochondrion | 79.49 | 78.68 |
KRH63367 | Soybean | nucleus | 79.49 | 78.68 |
KRH54535 | Soybean | cytosol | 79.49 | 78.68 |
AT5G15200.1 | Thale cress | cytosol | 76.92 | 75.76 |
CDX91003 | Canola | cytosol | 75.9 | 75.13 |
CDX85559 | Canola | extracellular | 75.9 | 75.13 |
CDX85058 | Canola | cytosol | 75.9 | 75.13 |
CDX78618 | Canola | cytosol | 75.9 | 75.13 |
CDX70599 | Canola | cytosol | 75.9 | 75.13 |
CDX69542 | Canola | cytosol | 75.9 | 75.13 |
Bra008713.1-P | Field mustard | cytosol | 75.9 | 75.13 |
Bra006289.1-P | Field mustard | cytosol | 75.9 | 75.13 |
Bra023511.1-P | Field mustard | cytosol | 73.85 | 73.1 |
HORVU2Hr1G028510.1 | Barley | cytosol | 87.18 | 72.03 |
Protein Annotations
MapMan:17.1.3.1.10 | Gene3D:3.10.290.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0015935 | GO:GO:0019538 | GO:GO:0019843 | GO:GO:0030529 | EnsemblPlantsGene:HORVU5Hr1G038920 | EnsemblPlants:HORVU5Hr1G038920.1 |
InterPro:IPR002942 | InterPro:IPR036986 | UniProt:M0XW49 | PFAM:PF00163 | PFAM:PF01479 | ScanProsite:PS00632 |
PFscan:PS50889 | PANTHER:PTHR11831 | PANTHER:PTHR11831:SF15 | InterPro:Ribosomal_S4/S9 | InterPro:Ribosomal_S4/S9_N | InterPro:Ribosomal_S4/S9_euk/arc |
InterPro:Ribosomal_S4_CS | InterPro:S4_RNA-bd | InterPro:S4_RNA-bd_sf | SMART:SM00363 | SMART:SM01390 | SUPFAM:SSF55174 |
TIGRFAMs:TIGR01018 | UniParc:UPI00016EBF0C | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:280775389..280777931
Molecular Weight (calculated)
22489.4 Da
IEP (calculated)
10.985
GRAVY (calculated)
-0.638
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHVNFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNAARH LLTLDEKNPR RIFEGAALLR RMNRYGLLAE GQDKLDYVLA
101: LTAENFLARR LQTLVFKAGM AKSIHHARVL IRQRHIRVGR QIVNVPSFMV RVESEKHIDF SLTSPFGGGP AGRVKRKNQK KASGGGDAGG DEEEE
101: LTAENFLARR LQTLVFKAGM AKSIHHARVL IRQRHIRVGR QIVNVPSFMV RVESEKHIDF SLTSPFGGGP AGRVKRKNQK KASGGGDAGG DEEEE
001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE
Arabidopsis Description
RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.