Factsheet for TraesCS5B01G112200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, nucleus

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G121600.1	Wheat	cytosol, mitochondrion	100.0	100.0
TraesCS5A01G104000.1	Wheat	cytosol, mitochondrion	100.0	100.0
HORVU5Hr1G038920.1	Barley	plasma membrane	100.0	100.0
Zm00001d041760_P001	Maize	plasma membrane, plastid	95.38	95.88
EES15996	Sorghum	cytosol	94.87	94.87
TraesCS2B01G183500.1	Wheat	cytosol, mitochondrion	85.64	85.64
GSMUA_Achr8P10060_001	Banana	cytosol	83.59	82.74
GSMUA_Achr2P06950_001	Banana	cytosol	83.59	82.74
GSMUA_Achr1P13080_001	Banana	plasma membrane	83.59	82.74
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	83.08	82.23
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	83.08	82.23
PGSC0003DMT400059349	Potato	cytosol	83.08	82.23
Solyc04g005680.2.1	Tomato	nucleus, plastid, unclear	83.08	82.23
GSMUA_Achr8P30200_001	Banana	cytosol	83.08	82.23
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	83.08	82.23
Solyc05g007250.2.1	Tomato	nucleus	82.56	81.73
PGSC0003DMT400007431	Potato	cytosol	82.56	81.73
KRH03454	Soybean	mitochondrion	81.03	80.2
KRH56926	Soybean	mitochondrion	81.03	80.2
VIT_14s0108g00460.t01	Wine grape	cytosol	80.51	79.7
VIT_17s0000g05970.t01	Wine grape	cytosol	80.51	79.7
VIT_01s0026g02110.t01	Wine grape	cytosol	80.0	79.19
AT5G39850.1	Thale cress	cytosol, mitochondrion	79.49	78.68
KRH54535	Soybean	cytosol	79.49	78.68
KRH63367	Soybean	nucleus	79.49	78.68
AT5G15200.1	Thale cress	cytosol	76.92	75.76
Bra008713.1-P	Field mustard	cytosol	75.9	75.13
CDX91003	Canola	cytosol	75.9	75.13
CDX85559	Canola	extracellular	75.9	75.13
Bra006289.1-P	Field mustard	cytosol	75.9	75.13
CDX85058	Canola	cytosol	75.9	75.13
CDX78618	Canola	cytosol	75.9	75.13
CDX70599	Canola	cytosol	75.9	75.13
CDX69542	Canola	cytosol	75.9	75.13
Bra023511.1-P	Field mustard	cytosol	73.85	73.1

Protein Annotations

MapMan:17.1.3.1.10	Gene3D:3.10.290.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0019843	InterPro:IPR002942	InterPro:IPR036986	PFAM:PF00163
PFAM:PF01479	ScanProsite:PS00632	PFscan:PS50889	PANTHER:PTHR11831	PANTHER:PTHR11831:SF15	InterPro:Ribosomal_S4/S9
InterPro:Ribosomal_S4/S9_N	InterPro:Ribosomal_S4/S9_euk/arc	InterPro:Ribosomal_S4_CS	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363
SMART:SM01390	SUPFAM:SSF55174	TIGRFAMs:TIGR01018	EnsemblPlantsGene:TraesCS5B01G112200	EnsemblPlants:TraesCS5B01G112200.1	TIGR:cd00165
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:173855704..173858002

Molecular Weight (calculated)

22489.4 Da

IEP (calculated)

10.985

GRAVY (calculated)

-0.638

Length

195 amino acids

Sequence
(BLAST)

001: MVHVNFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNAARH LLTLDEKNPR RIFEGAALLR RMNRYGLLAE GQDKLDYVLA
101: LTAENFLARR LQTLVFKAGM AKSIHHARVL IRQRHIRVGR QIVNVPSFMV RVESEKHIDF SLTSPFGGGP AGRVKRKNQK KASGGGDAGG DEEEE

Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)

001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE

Arabidopsis Description

RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.