CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 4

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54535	Soybean	cytosol	100.0	100.0
KRH03454	Soybean	mitochondrion	98.48	98.48
KRH56926	Soybean	mitochondrion	98.48	98.48
VIT_17s0000g05970.t01	Wine grape	cytosol	95.43	95.43
VIT_14s0108g00460.t01	Wine grape	cytosol	95.43	95.43
GSMUA_Achr1P13080_001	Banana	plasma membrane	94.42	94.42
GSMUA_Achr8P30200_001	Banana	cytosol	93.91	93.91
GSMUA_Achr8P10060_001	Banana	cytosol	93.4	93.4
GSMUA_Achr2P06950_001	Banana	cytosol	93.4	93.4
VIT_01s0026g02110.t01	Wine grape	cytosol	92.89	92.89
Solyc04g005680.2.1	Tomato	nucleus, plastid, unclear	92.39	92.39
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	92.39	92.39
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	92.39	92.39
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	92.39	92.39
PGSC0003DMT400007431	Potato	cytosol	91.88	91.88
Solyc05g007250.2.1	Tomato	nucleus	91.88	91.88
PGSC0003DMT400059349	Potato	cytosol	91.37	91.37
AT5G39850.1	Thale cress	cytosol, mitochondrion	90.36	90.36
Os11t0602600-01	Rice	nucleus	84.26	85.13
Os03t0154700-01	Rice	mitochondrion	84.26	85.13
Zm00001d047186_P001	Maize	extracellular, plasma membrane	83.25	84.97
AT5G15200.1	Thale cress	cytosol	84.77	84.34
OQU90309	Sorghum	cytosol	82.74	84.02
Zm00001d006924_P001	Maize	plastid	82.23	83.94
CDX69542	Canola	cytosol	83.76	83.76
Bra006289.1-P	Field mustard	cytosol	83.76	83.76
Bra008713.1-P	Field mustard	cytosol	83.76	83.76
CDX70599	Canola	cytosol	83.76	83.76
CDX78618	Canola	cytosol	83.76	83.76
CDX85058	Canola	cytosol	83.76	83.76
CDX85559	Canola	extracellular	83.76	83.76
CDX91003	Canola	cytosol	83.76	83.76
EER99750	Sorghum	cytosol	82.23	83.51
EES15996	Sorghum	cytosol	81.73	82.56
Zm00001d041760_P001	Maize	plasma membrane, plastid	80.71	81.96
Bra023511.1-P	Field mustard	cytosol	81.73	81.73
Zm00001d022218_P001	Maize	plastid	72.59	81.25
TraesCS2B01G183500.1	Wheat	cytosol, mitochondrion	80.2	81.03
TraesCS2D01G164100.1	Wheat	golgi, unclear	80.2	81.03
TraesCS5A01G104000.1	Wheat	cytosol, mitochondrion	78.68	79.49
TraesCS5B01G112200.1	Wheat	golgi, nucleus, unclear	78.68	79.49
TraesCS5D01G121600.1	Wheat	cytosol, mitochondrion	78.68	79.49
HORVU5Hr1G038920.1	Barley	plasma membrane	78.68	79.49
Os03t0379500-01	Rice	cytosol	40.61	76.92
Os11t0602500-00	Rice	cytosol	80.71	76.08
Zm00001d029340_P003	Maize	cytosol	53.3	75.54
OQU92521	Sorghum	mitochondrion	75.63	74.87
Zm00001d022223_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	38.07	70.75
HORVU2Hr1G028510.1	Barley	cytosol	80.2	66.95
Os07t0628400-00	Rice	cytosol	30.46	64.52
Zm00001d006923_P003	Maize	cytosol	69.04	55.97

Protein Annotations

EntrezGene:100790098	EntrezGene:100810569	MapMan:17.1.3.1.10	Gene3D:3.10.290.10	EMBL:ACUP02002669	EMBL:ACUP02003537
EMBL:BT096348	UniProt:C6TFG0	EnsemblPlantsGene:GLYMA_04G171400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0019843	GO:GO:0022627
GO:GO:0030529	GO:GO:0045903	InterPro:IPR002942	InterPro:IPR036986	ProteinID:KRH54535.1	EnsemblPlants:KRH63367
ProteinID:KRH63367	ProteinID:KRH63367.1	PFAM:PF00163	PFAM:PF01479	ScanProsite:PS00632	PFscan:PS50889
PANTHER:PTHR11831	PANTHER:PTHR11831:SF16	InterPro:Ribosomal_S4/S9	InterPro:Ribosomal_S4/S9_N	InterPro:Ribosomal_S4/S9_euk/arc	InterPro:Ribosomal_S4_CS
InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363	SMART:SM01390	SUPFAM:SSF55174	TIGRFAMs:TIGR01018
UniParc:UPI0001B1662B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:42832426..42834580

Molecular Weight (calculated)

23050.0 Da

IEP (calculated)

10.980

GRAVY (calculated)

-0.720

Length

197 amino acids

Sequence
(BLAST)

001: MVHVSFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNNARN LLTLDEKNPR RIFEGEALLR RMFRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTLVFKSGM AKSIHHARVL IKQRHIRVGR QVVNIPSFLV RVDSQKHIDF SLTSPLGGGR PGRVKRRNQR AAAKKAAGGD GDEEDED

Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)

001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE

Arabidopsis Description

RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.