Factsheet for Zm00001d006924_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99750	Sorghum	cytosol	97.41	96.91
Zm00001d047186_P001	Maize	extracellular, plasma membrane	96.37	96.37
OQU90309	Sorghum	cytosol	96.37	95.88
TraesCS2D01G164100.1	Wheat	golgi, unclear	91.71	90.77
TraesCS2B01G183500.1	Wheat	cytosol, mitochondrion	91.71	90.77
Zm00001d041760_P001	Maize	plasma membrane, plastid	91.19	90.72
Zm00001d022218_P001	Maize	plastid	80.83	88.64
GSMUA_Achr1P13080_001	Banana	plasma membrane	87.05	85.28
GSMUA_Achr2P06950_001	Banana	cytosol	87.05	85.28
GSMUA_Achr8P10060_001	Banana	cytosol	87.05	85.28
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	86.53	84.77
GSMUA_Achr8P30200_001	Banana	cytosol	86.53	84.77
Zm00001d029340_P003	Maize	cytosol	60.62	84.17
Solyc04g005680.2.1	Tomato	nucleus, plastid, unclear	85.49	83.76
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	85.49	83.76
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	85.49	83.76
PGSC0003DMT400059349	Potato	cytosol	85.49	83.76
KRH56926	Soybean	mitochondrion	85.49	83.76
KRH03454	Soybean	mitochondrion	85.49	83.76
Solyc05g007250.2.1	Tomato	nucleus	84.97	83.25
AT5G39850.1	Thale cress	cytosol, mitochondrion	84.97	83.25
VIT_17s0000g05970.t01	Wine grape	cytosol	84.97	83.25
VIT_14s0108g00460.t01	Wine grape	cytosol	84.97	83.25
PGSC0003DMT400007431	Potato	cytosol	84.97	83.25
VIT_01s0026g02110.t01	Wine grape	cytosol	84.46	82.74
KRH54535	Soybean	cytosol	83.94	82.23
KRH63367	Soybean	nucleus	83.94	82.23
AT5G15200.1	Thale cress	cytosol	81.87	79.8
CDX85058	Canola	cytosol	80.83	79.19
CDX78618	Canola	cytosol	80.83	79.19
CDX70599	Canola	cytosol	80.83	79.19
CDX69542	Canola	cytosol	80.83	79.19
CDX85559	Canola	extracellular	80.83	79.19
CDX91003	Canola	cytosol	80.83	79.19
Bra008713.1-P	Field mustard	cytosol	80.83	79.19
Bra006289.1-P	Field mustard	cytosol	80.83	79.19
Zm00001d022223_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.01	78.3
Bra023511.1-P	Field mustard	cytosol	78.76	77.16
HORVU2Hr1G028510.1	Barley	cytosol	92.75	75.85
Os07t0628400-00	Rice	cytosol	34.72	72.04
Zm00001d006923_P003	Maize	cytosol	70.98	56.38

Protein Annotations

EntrezGene:100283332	MapMan:17.1.3.1.10	Gene3D:3.10.290.10	UniProt:B6TH64	EMBL:EU964329	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0019843
InterPro:IPR002942	InterPro:IPR036986	EMBL:JX232263	ProteinID:ONM25507.1	ProteinID:ONM25508.1	PFAM:PF00163
PFAM:PF01479	PFscan:PS50889	PANTHER:PTHR11831	PANTHER:PTHR11831:SF21	InterPro:Ribosomal_S4/S9	InterPro:Ribosomal_S4/S9_N
InterPro:Ribosomal_S4/S9_euk/arc	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363	SMART:SM01390	SUPFAM:SSF55174
TIGRFAMs:TIGR01018	UniParc:UPI000182D477	EnsemblPlantsGene:Zm00001d006924	EnsemblPlants:Zm00001d006924_P001	EnsemblPlants:Zm00001d006924_T001	SEG:seg

Description

40S ribosomal protein S9%3B Ribosomal protein S9

Coordinates

chr2:-:219456302..219459200

Molecular Weight (calculated)

22518.4 Da

IEP (calculated)

10.899

GRAVY (calculated)

-0.717

Length

193 amino acids

Sequence
(BLAST)

001: MVHVNFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLGE GQNKLDYVLA
101: LTVENFLQRR LQTIVFKNGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESEKHIDF SLTSPLGGGP AGRVKRKNQK KASGGGDAEE DEE

Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)

001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE

Arabidopsis Description

RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.